Gene detail

Detailed information of amic_s0035.g95.t1 in Acropora microphthalma

Genomic Location: sc0000035_pilon:1497117...1516141
NR annotation: XP_015772184.1, PREDICTED: synaptotagmin-like protein 5 [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0035.g95.t1

ATGGTGGAAGATATCTATATTGACGTGAATTATCTTACTGAGTCAGAGAGGGATGCTATCCTTCAAGTACTTGCAAGGGACGAGGAGTTGAGAAAGCAAGAAAAACGAAGAATAAGCAAGCTAAAGAATGAACTGGACGAGATCAAGTCGAGGGGAGCAAGCGAGGACGATATCAAATCTGCACGAGTTTGCGCGAGGTGTCGTACTCCATTTGGGCTCGTTTTCAACACTGGAGCTCTTTGTCCGAAATGCGAAGCTCGTGTTTGCAAGGAGTGCCGTAAAGAAGACAAATCTAAGTGGCTTTGTGTTTTATGCGAAAAAATCAGGGAAGTGAGAGCTGAATCAGGAGCTTGGTTTTTTGAAGAAGAAAGAAAGAAGAGAGACAGACCACGGCTTTTTGGCTCAGCATTATTGCGTGCATCCCTTCGAAGAGCGAAGCTACCGTCTTATGGATCCTACAAAGAAAGTGATCCTGGGTCACCACCCGTCATCACACAGATGAACTTAGAGCGGCGGGCAGGTGGACTTCATCGCCCTGTGCCAGTGCACATGTCAAGCCTAGCTGAGAAAGGTGGAGAGGAAGAGAATGATCAAATGGACGAAGCGGAAGTTAATCAGAACTACAAACAGTATGCCAAGGCCACCCCAGTTGCCAGAACAGTAGAGGAAGAACAAAGTGATGAACAGGAGAAGGGCTCCTTTTCTTCCTGTATATCTACACCTAGAGGCTCACTAGTGGAGGATGTGGATGTTAAGGCTTCGGAAGAAGCTGATAAGGAGGTTTTTGGTGATGCGGATGCTCCTGAAGAAACAATTTTTGACCATTTACCAGCCAAAGATTACAGCGAGACGGAATCAGAAGGGGTAAATGTGGATAAAGGAATGATTGAAAGCAAGGAAGATGATGAGATCGCCACAGAAAACGATCTTAGTCGAGAAGAAGTTCAAAGCTTTGAGGAAAAAGTCAATGATGAGATTGCCACAGAGAACGATCTTAGTCGAGAAAAGGAAGAAGTTCAAAGCTTTGAGGAAAAAGTCAACAATTGGGAAATCGACCAAAAACTAATTGAAGACAACAGTGAAGTAACAAAGAAGGAAGATAATGTAGAGGTCATCTCCAGCTGGCACCAGGTCGCCCACGAATGGACTGAATCAGGCCCAGGAAATTCAGCCCAGGACACCCAGTCATCGAAGGAGTTCTTGAATGTAAGACCGGCCTCACCAGATTCTGAGACAACGGGAGAGTTCTTTACACCGGCAGCCAGTCCTTTCCACTCGGGACCTGCTACCCCTGCCCTCTCGGACCGTGGACAGAGTGAAGGAGAAACGGGTTCAGCGTCAGAAATCTTCGTGGATGCTGGTGATGCGATGCCCATAGAAGGGGGTGCAACCCCAGTCATTGAGCTGTCGGAAAAGGATGGTGGAGAGGAAAACGCTGTAGATGGGACTGTCACTCAACCAGAGATAACTTGCGAATCAGAGGAACCCGATGATGGGGCAAAACAGGAAGAAGACCATAGGACACCTATACCAAATGATGATACAAATTCCGTTGACCAAGCTTTTGCTTTCTATGGGAAAGAGAATCCACATCTTAGTCACAGAACTCTCCAAGATCAGCTTAACATACTTAGCATGGGAAGTCGTGAGAGCATAGTCAGCTATTACAGTGATGCAGGTGAAGGTCGGTTTGGTAATATTCCCGTGACTGGCGAGATACTGTTTGGATTAAAGTATGACAAGAAAAAAAATCAGCTTCAGGTACAGATTCACCGAGCCAAGAATATTGCGCCTGCGGACGAAAAGAAGGGAAGATCCGATCCCTACGTGAAGCTTTATCTCTTACCGGATaaaacgaaaggcggcaaacgcaagacgaaaacgaagaggaatacTTTGGAACCAGATTTTGACGAAATACTTGTATTTAAAATCGGGTTCGACGAGATGTTGACGCGCTCACTATGGCTGACCATGTGGAACCACGACACGTTTGGACACAATGATTTCTTAGGTGAAGTGATGCTTCCTTTGGACACATACCAGGAATCTGGATTCAGCTGGGATGATCCAACACCGAACTGGTATCCTCTTCACGAAAGGCGAGTCGAGCCATCCCTGATGACTTACTGTGGAGATTTAACCTTTTCGCTGATGTTTGAGCCTGagaaggaaaaccagaaggataaaaagaagaagaagaaaaagcagGGAGGACAACTGCACATCAAACTGAAAGAGGCGCGAAACCTTCCTGCCAAGGACTCCAGTGGTTTCTCGGATCCATTCGTTAAAAGTTATCTTCTGCCAGATACAAGCAAAAAGACCAAACAAAAGACACACGTTGTCAAAAAGAACCTCAATCCAGTTTGGGACTTCTACTACACGTACGGCAATCAGACTCTTGAAGAGCTTAGGAACCGCGTGCTTGAGTTGACCGTGTGGGACTATGACCGTGGCTCCAGCAACGACTTTCTGGGAGGCGTGCGGCTGGGCCTGGGCAGTAAATCGGAACCGTGGGACGATTCCCAGGGACTGGAGATACAGGCCTGGCAATTGATGCTGGACAGACCCAATCAGTGGCATGAGTATACGCTCAATCTGCGGTCAAGTATGAACAGTCAGACGGACTAA

Transcript

amic_s0035.g95.t1

GATCACTTCCTTTATTCTCTATATTATTGAAGAATTCGCAATGTTTGGGAAACTTTTGTAGGGACAGATATTGAATATGACTTTTTTTTCCGGTTGGCAGAAGGAGATGTTCATTTACCAGCCCGCGGATGAATGAAATGATAAAAACTCACGTACAAGTAAAAACTTGATGATTTTTACATAAGTAGTATGGTGGAAGATATCTATATTGACGTGAATTATCTTACTGAGTCAGAGAGGGATGCTATCCTTCAAGTACTTGCAAGGGACGAGGAGTTGAGAAAGCAAGAAAAACGAAGAATAAGCAAGCTAAAGAATGAACTGGACGAGATCAAGTCGAGGGGAGCAAGCGAGGACGATATCAAATCTGCACGAGTTTGCGCGAGGTGTCGTACTCCATTTGGGCTCGTTTTCAACACTGGAGCTCTTTGTCCGAAATGCGAAGCTCGTGTTTGCAAGGAGTGCCGTAAAGAAGACAAATCTAAGTGGCTTTGTGTTTTATGCGAAAAAATCAGGGAAGTGAGAGCTGAATCAGGAGCTTGGTTTTTTGAAGAAGAAAGAAAGAAGAGAGACAGACCACGGCTTTTTGGCTCAGCATTATTGCGTGCATCCCTTCGAAGAGCGAAGCTACCGTCTTATGGATCCTACAAAGAAAGTGATCCTGGGTCACCACCCGTCATCACACAGATGAACTTAGAGCGGCGGGCAGGTGGACTTCATCGCCCTGTGCCAGTGCACATGTCAAGCCTAGCTGAGAAAGGTGGAGAGGAAGAGAATGATCAAATGGACGAAGCGGAAGTTAATCAGAACTACAAACAGTATGCCAAGGCCACCCCAGTTGCCAGAACAGTAGAGGAAGAACAAAGTGATGAACAGGAGAAGGGCTCCTTTTCTTCCTGTATATCTACACCTAGAGGCTCACTAGTGGAGGATGTGGATGTTAAGGCTTCGGAAGAAGCTGATAAGGAGGTTTTTGGTGATGCGGATGCTCCTGAAGAAACAATTTTTGACCATTTACCAGCCAAAGATTACAGCGAGACGGAATCAGAAGGGGTAAATGTGGATAAAGGAATGATTGAAAGCAAGGAAGATGATGAGATCGCCACAGAAAACGATCTTAGTCGAGAAGAAGTTCAAAGCTTTGAGGAAAAAGTCAATGATGAGATTGCCACAGAGAACGATCTTAGTCGAGAAAAGGAAGAAGTTCAAAGCTTTGAGGAAAAAGTCAACAATTGGGAAATCGACCAAAAACTAATTGAAGACAACAGTGAAGTAACAAAGAAGGAAGATAATGTAGAGGTCATCTCCAGCTGGCACCAGGTCGCCCACGAATGGACTGAATCAGGCCCAGGAAATTCAGCCCAGGACACCCAGTCATCGAAGGAGTTCTTGAATGTAAGACCGGCCTCACCAGATTCTGAGACAACGGGAGAGTTCTTTACACCGGCAGCCAGTCCTTTCCACTCGGGACCTGCTACCCCTGCCCTCTCGGACCGTGGACAGAGTGAAGGAGAAACGGGTTCAGCGTCAGAAATCTTCGTGGATGCTGGTGATGCGATGCCCATAGAAGGGGGTGCAACCCCAGTCATTGAGCTGTCGGAAAAGGATGGTGGAGAGGAAAACGCTGTAGATGGGACTGTCACTCAACCAGAGATAACTTGCGAATCAGAGGAACCCGATGATGGGGCAAAACAGGAAGAAGACCATAGGACACCTATACCAAATGATGATACAAATTCCGTTGACCAAGCTTTTGCTTTCTATGGGAAAGAGAATCCACATCTTAGTCACAGAACTCTCCAAGATCAGCTTAACATACTTAGCATGGGAAGTCGTGAGAGCATAGTCAGCTATTACAGTGATGCAGGTGAAGGTCGGTTTGGTAATATTCCCGTGACTGGCGAGATACTGTTTGGATTAAAGTATGACAAGAAAAAAAATCAGCTTCAGGTACAGATTCACCGAGCCAAGAATATTGCGCCTGCGGACGAAAAGAAGGGAAGATCCGATCCCTACGTGAAGCTTTATCTCTTACCGGATaaaacgaaaggcggcaaacgcaagacgaaaacgaagaggaatacTTTGGAACCAGATTTTGACGAAATACTTGTATTTAAAATCGGGTTCGACGAGATGTTGACGCGCTCACTATGGCTGACCATGTGGAACCACGACACGTTTGGACACAATGATTTCTTAGGTGAAGTGATGCTTCCTTTGGACACATACCAGGAATCTGGATTCAGCTGGGATGATCCAACACCGAACTGGTATCCTCTTCACGAAAGGCGAGTCGAGCCATCCCTGATGACTTACTGTGGAGATTTAACCTTTTCGCTGATGTTTGAGCCTGagaaggaaaaccagaaggataaaaagaagaagaagaaaaagcagGGAGGACAACTGCACATCAAACTGAAAGAGGCGCGAAACCTTCCTGCCAAGGACTCCAGTGGTTTCTCGGATCCATTCGTTAAAAGTTATCTTCTGCCAGATACAAGCAAAAAGACCAAACAAAAGACACACGTTGTCAAAAAGAACCTCAATCCAGTTTGGGACTTCTACTACACGTACGGCAATCAGACTCTTGAAGAGCTTAGGAACCGCGTGCTTGAGTTGACCGTGTGGGACTATGACCGTGGCTCCAGCAACGACTTTCTGGGAGGCGTGCGGCTGGGCCTGGGCAGTAAATCGGAACCGTGGGACGATTCCCAGGGACTGGAGATACAGGCCTGGCAATTGATGCTGGACAGACCCAATCAGTGGCATGAGTATACGCTCAATCTGCGGTCAAGTATGAACAGTCAGACGGACTAACAGTGACGCCGATGGACTAAAATACTTGACGGTCATTTTGATTATTGGCTTGTCAGGCCAAAAGATGCTCGTTTCATACGTATTGTAGGTATCGAATTGGTGTTTGTTGAATGCCCGTTAGAGGGTTAGGAAAAAATAAAAAACTGGATGCGTTTGTGCACATTATTGCGGCGACGAAGTATTTTTTGTAGAATGTAAATTCTTCGTTCTTGTGCAGGAGAGCATCAAACGTCTATCTTCATTTTGTATTTGGCAGTGTTAAGAATTTGGTAACCATTTTCATATTTTTGTCAATGATGCAGTTTTGTACGGATGCAGTTCACAATGGCTACTTTTTCCTTGGTGGTTTAATTAAAGCATTATTTAATGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VHQ7	Synaptotagmin-like protein 4 OS=Rattus norvegicus OX=10116 GN=Sytl4 PE=1 SV=1
Q9R0Q1	Synaptotagmin-like protein 4 OS=Mus musculus OX=10090 GN=Sytl4 PE=1 SV=1
Q96C24	Synaptotagmin-like protein 4 OS=Homo sapiens OX=9606 GN=SYTL4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000239 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF02318 all species →	FYVE_2	FYVE-type zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR041282 all species →	Domain	FYVE-type zinc finger	Interproscan
IPR001565 all species →	Domain	Synaptotagmin	Interproscan
IPR043567 all species →	Domain	Synaptotagmin-like 1-5, C2B domain	Interproscan
IPR010911 all species →	Domain	Rab-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45716 all species →	BITESIZE, ISOFORM I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0042043 all species →	Molecular Function	neurexin family protein binding	Interproscan
GO:0070382 all species →	Cellular Component	exocytic vesicle	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0035.g95.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.