Gene detail

Detailed information of amic_s0036.g11.t1 in Acropora microphthalma

Genomic Location: sc0000036_pilon:225518...255465
NR annotation: XP_029197422.2, sodium bicarbonate transporter-like protein 11 isoform X2 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0036.g11.t1

ATGGACAGTACTTTTGCTTCAGATGTCTTCATTGACCGTGAAGTTGACGGTTCTGTTGTGAAAATGGAAGGCAGTGGTAGCGAATCTGTCCCAATGCACTCACTTTCAAACATAGAAGATGACGATTTAGAAGTGATAGCGTTACAGCGTGAAGCGGGACGACAGCTGAATGGATCTGATAACGATGTGTCAGGTTTTGTATCCACATCGTTTTCGGTGGAAGATCCACTTTGTGAAGATGGTGGACCTTGTACTTCTCTTATGTTTTCAAGTCACCAGAAACTGATGCCAAAAAACTTCTCAGGAGAAATCAGGGCTTCAAAAGATGTGGAGATATTCCTTGAGCGACCAACCCTACTACTGGATCTCCAAGAGACAAGCTTGCAAGGAATTATTGATGCCATGCTTCAGAAAATGATCATAGGTGCTGATGCAAAATATATCAGTTTTGACCAAGCCAGGATGGCATTCTTTACCAAGGATTCAGTCCATTGTCTGTCACAAGTCATCCAAGGAACTGAGATATCAGATGGAGGAGGATGGGAAGAAACACAGAACTGGCTCATTGCTTTGGGGGAGCTACCATCAGTACAACAGAGTCATGTGGCTATTGCTCGCTTGAAGCACCCAGTTAACCTGGGAAGGTCACTGGAGGAGACTCATTTAGTGGTCTTAGTTCTTGCTCCAAGTAAAATTAAAAGCACTAAAAGCTCTTTAGAGACAGGAAAGACCTTTGCAACATTACTGGCTAATATAGAAACAAGACAACTTCTCATTGAGGTGGAAACAGAGGAGCAGTTCAAGAAAGTATTGGCTGACCGCAGACATTATCTTGCTTCTTGGGCAAAGCAAGGAACAAAGAGAATTTCAGAGAGACGATTGACTCTTCATCCTAAATCCTCCTTTGTGCACCAAAGAGAAGACCAAAAGAAACCGGAACTCTGTTCATTTGGATGTGGACTCATGAGGGATCTAAAGAGGAGATTGCCACATTATTTATCAGATTATAAAGATGGCACAAGAGGTCGCCATACAATTCCCAAGGTAGTCTCTACAACTCTGTTTTTGTACTTTGCTTGCCTTCTTCCATGCATCGCCTTTGGTGTCCTGAACGGCCGCAACACAGAAGGACAGATTGATGTACAGAAAGTAATCATATCACAGGCTTTTGGAGGGATTCTATTCGCATTATTTGGAGGCCAACCATTGATTGTCTTGCTTACCACAGCACCTTTGGCCCTTTATATTAAAGTGATCTACAACATCTCGGTAGACTTTGATCTGGATTTCTTGGCTTTGTATTCCTGTACTGGATTGTGGAATGCTTTCTTCCTTTTTATCTACTCCACATTTGGACTCTCGCAGATTATGAAGTGGTCAACAAGGTCTACTGAAGAAATCTTTGCGTTGTTCATCTCCCTTGCATTTACAGTGGATGCGCTCAGTAGTATTATCAAAGAATATTCTAGCCTTCACTGCCCGACTGCCTGTTGGAATTCCTCTTCAAATAGCATTTCTCACTCATCAATTAATTGTACTCAGTTGACTGATAGCTCAGTGTGTCACAGAGAAGGTGGCCTGTCTTATGCTGTCATTAGCTTGGGGACAGTTTGGATTGGCTTGGCACTGTATAATTTCCGTAAGAGCCCATTCCTTGATGCTGGAAAGCGAGAGGCTCTGGCTGATTATGCACTTGTGGTAGCTGTTCTTGCTATGTCCTTTATTGCCTCGTTTTTTGTGAGGGACATTAAAAGGTACCAGTTTCAAGCTACTAGTTCATTTTCCTTTGCTGTCGCCCCTCTTCACAAGCTTAGCTGGGGAGCAGTGTTTGCTGGTATGGGGCTGGGGTTTTCTCTGTCATTGCTGTTCTTCATGGATCAGAATATCTCCAGCGCAATGGTGAATAACCCTGGAAACAGATTAAAGAAAGGCAGTGCCTATCACTGGGACTTGCTCGTGGTGGGATTTGTAAATGCTTTCCTATCAATTTTTGGCCTACCATGGGTGCATGCTGCATTGCCTCATTCACCCCTTCATGTCAGGGCATTAGCTGATGTAGAAGAAAGAGTTGACAGAGGGCATGTATTTGAAATCATCGTAAAAGTGAGAGAAACAAGGTTAACTGGCCTGCTGTCCAGTATTCTCATTGCATTGTCACTGCTGATGTTACCTACTCCACTCAAACTTGTTCCAACACCGGTGTTAGATGGCTTGTTCCTTTTCATGGCCATAACAGCATTGGATGGAAATCAAATGTTTGAGAGAGCATTGTTGTTGATTACAGAACAGGCTGCATACCCTCCCAATCACTACATCCGTCATGTCCCTCAGAGGAAGATGCACATCTACACTGCTCTTCAGTTCCTTCAGTTGGGTATCCTGTGTGGATTTGGCTTTGCTCCATTGCCATACCTCAAGATGGTCTTTCCTGTTCTTCTTATGTTAATATTGCCAATCAGGCATCTTGTTGTTCCAAAGTTAATTCCATCTGAGTACCTGGAAGCTTTAGATGTTCACTTGTGA

Transcript

amic_s0036.g11.t1

GATGCCTCGTGAAAATACTTTGCTCTCAAAACTTCAATAGGATGAGTGAATGTTGTGGAATGAACTGAAATTCTGATATTTCACAGTTTGGGTTTGAACTCGTTTGACAAACGTACAGGCGGCGTGTTCAGCTGTGTGCTCTTCGCAAAGAAGTATGGACAGTACTTTTGCTTCAGATGTCTTCATTGACCGTGAAGTTGACGGTTCTGTTGTGAAAATGGAAGGCAGTGGTAGCGAATCTGTCCCAATGCACTCACTTTCAAACATAGAAGATGACGATTTAGAAGTGATAGCGTTACAGCGTGAAGCGGGACGACAGCTGAATGGATCTGATAACGATGTGTCAGGTTTTGTATCCACATCGTTTTCGGTGGAAGATCCACTTTGTGAAGATGGTGGACCTTGTACTTCTCTTATGTTTTCAAGTCACCAGAAACTGATGCCAAAAAACTTCTCAGGAGAAATCAGGGCTTCAAAAGATGTGGAGATATTCCTTGAGCGACCAACCCTACTACTGGATCTCCAAGAGACAAGCTTGCAAGGAATTATTGATGCCATGCTTCAGAAAATGATCATAGGTGCTGATGCAAAATATATCAGTTTTGACCAAGCCAGGATGGCATTCTTTACCAAGGATTCAGTCCATTGTCTGTCACAAGTCATCCAAGGAACTGAGATATCAGATGGAGGAGGATGGGAAGAAACACAGAACTGGCTCATTGCTTTGGGGGAGCTACCATCAGTACAACAGAGTCATGTGGCTATTGCTCGCTTGAAGCACCCAGTTAACCTGGGAAGGTCACTGGAGGAGACTCATTTAGTGGTCTTAGTTCTTGCTCCAAGTAAAATTAAAAGCACTAAAAGCTCTTTAGAGACAGGAAAGACCTTTGCAACATTACTGGCTAATATAGAAACAAGACAACTTCTCATTGAGGTGGAAACAGAGGAGCAGTTCAAGAAAGTATTGGCTGACCGCAGACATTATCTTGCTTCTTGGGCAAAGCAAGGAACAAAGAGAATTTCAGAGAGACGATTGACTCTTCATCCTAAATCCTCCTTTGTGCACCAAAGAGAAGACCAAAAGAAACCGGAACTCTGTTCATTTGGATGTGGACTCATGAGGGATCTAAAGAGGAGATTGCCACATTATTTATCAGATTATAAAGATGGCACAAGAGGTCGCCATACAATTCCCAAGGTAGTCTCTACAACTCTGTTTTTGTACTTTGCTTGCCTTCTTCCATGCATCGCCTTTGGTGTCCTGAACGGCCGCAACACAGAAGGACAGATTGATGTACAGAAAGTAATCATATCACAGGCTTTTGGAGGGATTCTATTCGCATTATTTGGAGGCCAACCATTGATTGTCTTGCTTACCACAGCACCTTTGGCCCTTTATATTAAAGTGATCTACAACATCTCGGTAGACTTTGATCTGGATTTCTTGGCTTTGTATTCCTGTACTGGATTGTGGAATGCTTTCTTCCTTTTTATCTACTCCACATTTGGACTCTCGCAGATTATGAAGTGGTCAACAAGGTCTACTGAAGAAATCTTTGCGTTGTTCATCTCCCTTGCATTTACAGTGGATGCGCTCAGTAGTATTATCAAAGAATATTCTAGCCTTCACTGCCCGACTGCCTGTTGGAATTCCTCTTCAAATAGCATTTCTCACTCATCAATTAATTGTACTCAGTTGACTGATAGCTCAGTGTGTCACAGAGAAGGTGGCCTGTCTTATGCTGTCATTAGCTTGGGGACAGTTTGGATTGGCTTGGCACTGTATAATTTCCGTAAGAGCCCATTCCTTGATGCTGGAAAGCGAGAGGCTCTGGCTGATTATGCACTTGTGGTAGCTGTTCTTGCTATGTCCTTTATTGCCTCGTTTTTTGTGAGGGACATTAAAAGGTACCAGTTTCAAGCTACTAGTTCATTTTCCTTTGCTGTCGCCCCTCTTCACAAGCTTAGCTGGGGAGCAGTGTTTGCTGGTATGGGGCTGGGGTTTTCTCTGTCATTGCTGTTCTTCATGGATCAGAATATCTCCAGCGCAATGGTGAATAACCCTGGAAACAGATTAAAGAAAGGCAGTGCCTATCACTGGGACTTGCTCGTGGTGGGATTTGTAAATGCTTTCCTATCAATTTTTGGCCTACCATGGGTGCATGCTGCATTGCCTCATTCACCCCTTCATGTCAGGGCATTAGCTGATGTAGAAGAAAGAGTTGACAGAGGGCATGTATTTGAAATCATCGTAAAAGTGAGAGAAACAAGGTTAACTGGCCTGCTGTCCAGTATTCTCATTGCATTGTCACTGCTGATGTTACCTACTCCACTCAAACTTGTTCCAACACCGGTGTTAGATGGCTTGTTCCTTTTCATGGCCATAACAGCATTGGATGGAAATCAAATGTTTGAGAGAGCATTGTTGTTGATTACAGAACAGGCTGCATACCCTCCCAATCACTACATCCGTCATGTCCCTCAGAGGAAGATGCACATCTACACTGCTCTTCAGTTCCTTCAGTTGGGTATCCTGTGTGGATTTGGCTTTGCTCCATTGCCATACCTCAAGATGGTCTTTCCTGTTCTTCTTATGTTAATATTGCCAATCAGGCATCTTGTTGTTCCAAAGTTAATTCCATCTGAGTACCTGGAAGCTTTAGATGTTCACTTGTGATTATTAAAATAAAAAAAAAATAACAATAATAGCAATTTTCTGATTTAGTCTATTAATTTTCAACCATCAACATGTCATTCTTCATAGATAAATAACAATATCAATAACAATGAGAATCGAGGTAACAGGAAACCTTCTTAATTTCTTGAGACTTGTTTTTTGGGGTGTAGCACTAAGGCAATCCGCTCAGCTATACATGATTTTGGAAAGTATGTACCTTTGTGCTGAATTTGAtttttgtagcttactgacacttaggcgtaagctactctgctgtccttcttagtgagtgagtgaaacaatagaatccgagcccatattgcactctgtcaatttttatctgatactccccaatcttagagacttccaaggggacatattcttcctcagagaattttacaaagatattgtttaattacatcttcaggcccagtgtattgcaagtaataacaggtgcagtaagctacagtacatgcagtcatagactgtctattttTGTCCTAGCCTAGTTAGGCAAGCATTTTGTGAGTTTCTGAGCAAAGAAAGAAAGATTGCATTTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2AJN7	Solute carrier family 4 member 11 OS=Mus musculus OX=10090 GN=Slc4a11 PE=2 SV=1
Q8NBS3	Solute carrier family 4 member 11 OS=Homo sapiens OX=9606 GN=SLC4A11 PE=1 SV=3
P23348	Anion exchange protein 3 OS=Rattus norvegicus OX=10116 GN=Slc4a3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006246 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00955 all species →	HCO3_cotransp	HCO3- transporter family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003020 all species →	Family	Bicarbonate transporter, eukaryotic	Interproscan
IPR011531 all species →	Domain	Bicarbonate transporter-like, transmembrane domain	Interproscan
IPR016152 all species →	Homologous_superfamily	Phosphotransferase/anion transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11453 all species →	ANION EXCHANGE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005452 all species →	Molecular Function	solute:inorganic anion antiporter activity	Interproscan
GO:0006820 all species →	Biological Process	monoatomic anion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016323 all species →	Cellular Component	basolateral plasma membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0050801 all species →	Biological Process	monoatomic ion homeostasis	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13862	SLC4A11, BTR1; solute carrier family 4 (sodium borate transporter), member 11	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.