Gene detail

Detailed information of amic_s0036.g12.t1 in Acropora microphthalma

Genomic Location: sc0000036_pilon:258835...269805
NR annotation: XP_029197411.2, plasminogen activator inhibitor 1 RNA-binding protein-like isoform X2 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0036.g12.t1

GATTCTCTCCAAGCATGCATCGCGCGTGGAGCAAGGCAATCAAGGAGTGAAAAAATATCTGGAGGTGATTATCTCGAGCAGAGAGGTGTTTGCAGCACAATCTTCCATCATCTGTGCTTTTTCCATCACATCCACTGATGATGGCGGTGGAATACAGCATAGGCGTCACCAATCGCTTTGGTGCGTTAAATTTTGACGATGAAGACCTCGAAGATTTCCAGCCAAAGAAAGAGAAGATTAAGGTAAAGGAGGAGTCGCACGaagacagagccaagaagcaagacaagaaaactgcaaagcagcaaagcaaagaaacaaaACCCGCCAGCACCAAGAAGGATTTTGTTAACGAGGACTCTAGAAGAGGAGAGCGAACAGAAAACAGGCGTGGCGGTCGCGGAAGGGGTGATGTTCGAAGAGAGAACGAGAGAAACACACATTTGGCGAACGGTCCAACCGAAAGGCGGGACCGTGATAGCAACGCGCCGAGAGAACGACGAGGAGGAGGTGGATTTGGTGGTTTTAACCGTAGAAAGGAAGGTTCACATGGAGAAGATTCCCCCGAAAAGGAGGGAGGAGAAAGAGAGAGAGGAGGTCGAGGAATGCGAGGTTTTGGAGGAAGAGGTGGACGCGGACAGGTTGGTCAGCGTGGTGGAGGAAGCTTTGGGAGAAAACGAGAGTTTGAAAGGAGAAGCGGAAGTGATCGATCTTCTGTGAAACCTCAGGACAAACGTGAAGGCGGTGGACAATACAACTGGGGTACTCCAGGGACAGATGAAGATGCTGAAGTGACAGAATGGGGAGGAGCTTCTCCTGAGGCTGAGGTGACAGAATGGGGAGAAGCTTCCCCAGACCCTGACTCCTCCAAGGAAACAACAGAGGATGCTCAAGAGGACAAAGAAAACGAAGAAACTAAAGAGGAAGAGGAAGAAGAAGAACCCCTAAAGGAAATGACTTTGGATGAATGGAAAACGATGATGGAAAAGGACAAACCCAAGACAAAGTTCGAGCTGCGTAAAGCAGGCGAAGGAGAGAAAAAGGGCATGTGGAAAGATACCAGAGTGCTCAAAAAATCATCAGAGGATGACGATATGACGCAGTTTACAGTCAAGAGAGTCATTGAAGAGAAAATTAAATCCACTGGTCGAGTGAAGCAGATAATCCCCATGGATTTCAGAGCCGGCAATGAACGAAGAGGAGGGCGCGGCGGAAGGGGTGGCCGTGGAGGCCGAGGCAGAGGTGGGCGTGGTCGAGGAATTGGTAACCGCTCCGATGCCACTGAACGAGCCCAGTTTGACATAAACGCAGAGGAGGAATTTCCGACTCTGTCATAAAAAGAAAAATGGTCAGCGAGACCATAGATGACAAGACTTGAACTTGTTTCTAAAGACATGAACTTAACTGTCGCATATATTCAAGGGACTGGACGAGATAATTTTACGTGCCTTTTGATGGACAGAGCAGACGATTTTTCATAACTCGTTCGTTAGTTTCTTGTATGATGACTCCGTTGTCACAGGAATTAAAAAAAATAACCGAGAACTTTTCTTCCATAAATGAAACTGCCCTTTAAGGAAAGGTGTGTGATATGTAATGGATAAAGAATGTGGTCATTTCTCTGTTTGTGTGGTTTTAGTGTCTTGCTTCGAGCTTTCAACTGAAGGCCCCCTCCACCACCATTAACTGACTCACTTTTCTCTCTTTGAGTGAACTCACCGCAGTAAAACCTTTCATCCCAAGAGATTCATTTTGGTCATCTAGTCCTTCATCCAAAGCCTAAGAGTAACTTTTATTCATTACATCTCGAACGTTTTACTTGAATTTTACCCAAAGTGAAAGCTTGGAAAACAACACCTTCCCAACTGAGATGTGAAGTGATTTGTTTAGGTGGTGTGTATTATGGGCCCGATTTGGTTGCTATGAAAAGTCCTTCAAAAAAGAAAAAAAAACTGTACGTATTGAGGTATCTAAAAATCTCTTCGGTCCAAAAGATTATTCCGGACCATTGTAATTCGCACTAAGCTTTGTGAACAGCAAGGAGCATTGAAAAATAAAACAAAGGTACGTCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NC51	SERPINE1 mRNA-binding protein 1 OS=Homo sapiens OX=9606 GN=SERBP1 PE=1 SV=2
Q9CY58	SERPINE1 mRNA-binding protein 1 OS=Mus musculus OX=10090 GN=Serbp1 PE=1 SV=2
G1SW77	SERPINE1 mRNA-binding protein 1 OS=Oryctolagus cuniculus OX=9986 GN=SERBP1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004881 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04774 all species →	HABP4_PAI-RBP1	Hyaluronan / mRNA binding family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039764 all species →	Family	RNA binding protein HABP4/SERBP1-like	Interproscan
IPR006861 all species →	Domain	Hyaluronan/mRNA-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12299 all species →	HYALURONIC ACID-BINDING PROTEIN 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13199	SERBP1; plasminogen activator inhibitor 1 RNA-binding protein	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.