Gene detail

Detailed information of amic_s0037.g34.t2 in Acropora microphthalma

Genomic Location: sc0000037_pilon:672903...692648
NR annotation: XP_015747817.1, PREDICTED: uncharacterized protein LOC107327586 isoform X2 [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0037.g34.t2

GTTGATATTATCTCTTAACAATTTCACATTTTACAGAGTAAATGAAATTGACTTTATTAAAGCAATAATTTACACGAAGGGTGGCTGAAAATGGGGTATGTCTTCTGCAGAAATTCTTGTCATTGAGCCTCCATCCAATTTTGAAGTTTCAACTTGGCAGGCATCCAAGGAAAAAGGTTCTGGAGGTGGAGGGTGGATTATGCCCACACCTTTTGTAAGAGCATTCCAAGTCTGTGATATTAAAGCCAACCCGGAGAACTGGTTGAGAAGTTCCTTTATTCAACTGAAAGGTGCAAAGAGGCTAGAAATTACAATGGCTTACAAAATGAAAGGTTGCCCTAGTCAGGCAAAGGATAGCTGCAAGACATATATTGGTTTATGTGTACAACACTCGGATGGCGAACTTGTTGATTCAGATCCTTTAAAAGTAAAATATGATTTTGTTGAAAACATTGTGCCTGAAGGATCTCCTCTAAGCCCTGATGTCCTAACACCATTTACATATCATGGGGAAATAGTTACCAAAGCACAAGGGCTTTATATTGCAATCAAAGATGAAGGAGCTTGCATTCAAATCACAAACATTACTGTTGGTTATAACTACTGCCCTGAGAAAGGCAGGAATTTGATCATGTTTCCAAGAACAATTGCTCCAGTAAATGACTCTAATTTGATGAGGAAAATTGGAAAATGTAGTGACAAGAACGCTGTGAGCCAAGAGGCCTTGGTTGGAGTTTGTCTCAGTAGTGGAGAATGGAACATTTCCAAGAATGCAAAGTGTCTCTGTCAGAAGGGTTATGAGCTGACTGATTCATTTGAATGCAAAGTATCCAAGGGAAAAGGTTCTAAAGGTGCAGGGTGGACTATGCCCTCAGCTTTCCAAAGAACATTTGAGGTCTGTGATATTCAAAGGAACCCGGAGAACTGGTTGAGAAGTTTCTTTATTCAACTAAAAGGTGCAAAGAGGCTGGAAATTACAATGGCTTACAATATGAGAGGTTGCCCTAGTGATGCAAAGAAGAGCTGCAAGACATATATTGGTTTATATGTATATCACTCAGATAACAAACTTGTTGATTCAGATCCTGCAAAAGTAAACTATGATTTTGTTCAAAAAATTGTGCCTGAAGGGCCTCCTCTAAGACCCAATGTACGAGCACCATTCATATATCATGGGGAAATAGTTACCGAAGCAAAAGGGCTTTACATTGCAATCAAAGATGAAGGAACTTGCATTGCAATCAGTAACATAACTGTGGGTTATAACTACTGCCCTGAGAAAGGAAGGAATTTGGTCATGTTTCCAAGAACAATTGCTCCATCAAATGATACTAATTTGGTGATGAAAACTGGAAGGTGTACTGACAAGAATGCTGTGAGCCAAGAGGCCTTGGTTGGAGTTTGTCTCATTAGTGGAGAATGGAACATTTCCAAGAATGCAAAGTGTCTCTGTCCGAAGGGTTATGAGCTGACTGATGGATGCAAAGAATGCCCAAAAGGTTTGTTCAAGAGCACAATTAGCTATGCAAAGTGTGGTAGATGTCCTCAGCACTCAGTACCCAATCCCACAAGGACAAGCTGTACATGTGAACATGGATTCTATGCCTTGACTCTGTTGGTACCTTGCAAACCCATGTACTTGATAAAAGTAGAAAAAGAAGCATATACAGTATGAGAAGTCATATTATAAAGTGATCTATGCAAACAATAATAGACTTATTGAAGCTTTACCCCTAGCTCCACTGAATGCCAGTGCTATTGTCGTCAAACAAACATTTTTGACAATTTCTTGGGTTCCACGTGATGATGCCAACAGTACACTAGGATATTCCATTGATTGCTTCAGATGCAAGTCACTCCAAGACAAAGAATGCAGAGGGCATTGTAGTCAAAATGTTAAGTTTCGGCCAGGCGGCAATAACATCAGTACAGTCAACGTGACAGTGGTTGGTCTGCAGTCTGGAAGCTTTTATTTATTCCGAGTGTATTCAGTCAATGAATTGAATCAGCAGGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q07497	Ephrin type-B receptor 5 OS=Gallus gallus OX=9031 GN=EPHB5 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000240 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01404 all species →	Ephrin_lbd	Ephrin receptor ligand binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001090 all species →	Domain	Ephrin receptor ligand binding domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR050449 all species →	Family	Ephrin receptor tyrosine kinases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46877 all species →	EPH RECEPTOR A5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005005 all species →	Molecular Function	transmembrane-ephrin receptor activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0030425 all species →	Cellular Component	dendrite	Interproscan
GO:0048013 all species →	Biological Process	ephrin receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0037.g34.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.