Detailed information of amic_s0037.g47.t1 in Acropora microphthalma

Genomic Location: sc0000037_pilon:825993...834372
NR annotation: XP_020601267.1, threonylcarbamoyladenosine tRNA methylthiotransferase-like [Orbicella faveolata]
Species abbreviation AMICR · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6NS26Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Xenopus laevis OX=8355 GN=cdkal1 PE=2 SV=1
Q5VV42Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Homo sapiens OX=9606 GN=CDKAL1 PE=1 SV=1
Q91WE6Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Mus musculus OX=10090 GN=Cdkal1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005716 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04055
all species →		Radical_SAMRadical SAM superfamilyDomainInterproscan
PF01938
all species →		TRAMTRAM domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006638
all species →		DomainElp3/MiaA/NifB-like, radical SAM core domainInterproscan
IPR007197
all species →		DomainRadical SAMInterproscan
IPR002792
all species →		DomainTRAM domainInterproscan
IPR023404
all species →		Homologous_superfamilyRadical SAM, alpha/beta horseshoeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11918
all species →		RADICAL SAM PROTEINSInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003824
all species →		Molecular Functioncatalytic activityInterproscan
GO:0051536
all species →		Molecular Functioniron-sulfur cluster bindingInterproscan
GO:0005783
all species →		Cellular Componentendoplasmic reticulumInterproscan
GO:0035598
all species →		Molecular FunctionN6-threonylcarbomyladenosine methylthiotransferase activityInterproscan
GO:0035600
all species →		Biological ProcesstRNA methylthiolationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0037.g47.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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