Gene detail

Detailed information of amic_s0037.g62.t1 in Acropora microphthalma

Genomic Location: sc0000037_pilon:951261...960929
NR annotation: XP_029205213.1, COP9 signalosome complex subunit 7b-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0037.g62.t1

TAATTTTGCAAAAGTCGACTGATCATATTTTGGATACAACGAAGAAAGGATTTGTCACAAGTGTTGCGTTTATTCAGAAGCCAAAAATTAGCAGCGTACGACCTCTGTATCATCAACCTATCATCACCGAAGACAATTTTTCTATTCTCAAAAGATGAGAATTTTGGGTGGCCGTATATGAAGCAATCATTTGTGAGTCTACAGTTACGCGATATCTTGAGCTCAGGAAGGAGTCTGAGTACCAATAGCGGACATGATGACGGCTCTCAAGATTGGGAAGGCTTAGGAGAACTTTGTCAAAAAGAGGGTTAATGCCAGACCGCTGTGCAAAGATCGTGAGCGGAAATTATTGCAGACATCTCTTGCAGAAGAGCTCTGAATAATTCTTCCTCAAGTTTAAGAGGAGTATCTTTGCAGTGTAACATGGCAGAAAAGGAAGTGAAGACCAGCTTTAATCACAGTCATAACTTAGAGGAATATGTATTATTAGCAAAGTCTGCACGAGGTGCAGGTGTGGTTGCCCTAATACAAAAGGCTCTGGAAGCACCGGGAGTGTATGTGTTTGGAGAATTGATGGAGATGCCATCTGTTAAAGAGTTAGAAAAGTCAGAAAATTCAGGATTTTGGAATCTTTTGAACATATTTGCATTGGGGACATTTGCAGAATATAAAGCAAATTCAAGTTCCTTACCAGCCCTTAGCCCTCCACAACTTAAGAAACTACGGCATTTAACAATAGTCTCCTTAGCAGCTAAATCAAAGTTCATTCCTTACAGTGTATTATTAGAAGAACTGGACATCAAGAACCTCAGGGAACTAGAGGATTTAATTATTGATGCTATTTATGCTGATATTATCCATGGGAAGCTTGATCAGAAAAATAAACAGTTAGAGGTAGATTTTGCTATTGGTAGAGACATCACGCCAGACACGATAAACAGAGTCACTGAAGTTTTACAAGATTGGTGTGAAGGATGCGAGTCAGTTCTTCATAGCATAGagaaacaaatacaaagagcaaatacgcacaaagaaaagaagctgaaacagaaaacacaagttgaagcagaGGTTGAAAACTTGAAAAAGGCTATCAAGGCATCTTCACAGTCGGATATCGACAATGGAGCTGTTTCAGGGATGCCACCTCCATACCACAGTCAGCAATATCAACAGAAAGCTCTTACGTCTACCAAAACCAAAGGGTTGCGTGGAAGTGGCAAGGTTTTTGGAACTCAAGTTCGGAGATGACTAAGTGAGAACAACTAGCGAGTTTACGTTGATTTGTTCTCATTTTTTTTTAATATTTCGTCGTAATTTATGCCTGCGCAAGAATTTCTTGACCTGTCAGTCTTACTACGGACCACTCCTTCTATTTCGACTCATGAAATCTAGTTAAGAAGACGTGCTTTGCTATCCGCTGAACTCTAGTGGGAGGAGTTGAATGCCCTCTCCGAAGCACTGATTCCTGTGAAGTCACTCATTTGAGCGACAAGGAATAGTTTCCCCTGCGCTTAAGAAAACTTAAAGAGTTCTTCTAGATACTTAATTCCAACGGGTGCAGCATTGCTGGTTTTAGTTGTTTGTTGTGTTCCCTTTAGCCTTCCAAATTATTTCTCAGGAAAAAATGCATTAATGATTGAGTTGGCCTAATCTGATTTCACCATTTTCGCAATGACTTAAGCACTTCATGTATTTTGGTAAACCCTCAAACAAACTTCTCGTCAACAACGATAATGCTCACCAGCTCTCTCGTTGGCCACCGAAAGGAGATCTAGGTATCTTACGGTACGATTTGGAAGAGAAAACCCCACTCAGAAGCCATCTGTTTTGCGCATGCCCTAAGTGATGAGATCCGAAACACTTTTGTCACGAATTGGGTTGCCATGGCAACCAGTTAAAAACAAGGCAACATTAAACCTTCGTAACAGGCTTTTTAACTGGAGTACTTATAAATGGCGGAAATTCTCTTTCCACCATCTGGTACAAAACACGCAACTCAGGGAATTCAAGGTTTTATTGTTCCGTATTGCTGACTAGAGGCGAGCTTGGTTGTTGTAAATAAATTTAAGTAGGTCCTCTAGAGCATAGATCACTGGGTTATTTAATAACTTCAGTTGAAAGATATACTGAAGGCAAAGGAAGATAAAAACACTGATTGTTTGAGTGACTTAGTGTCTTGCAGAAGTATCAAAACCGATCATTATCTAAGTCATGCAAACCTTTGGTAGTCGTAGAGGGCCAATTTCAATTTTTTTTTTGACAAATGCATTATTATCGTCGGTTATATTCTGAAGTGTTGGGAAATTTTCAGAAAGCCGGAGGCAAACGAAAATATCACCTTTTTGGCTTTTAAAAGCTTCGCAGGTACAGAACGTAACGTAAAAAAGTCACTTGCACTAAGGATGACTGTCAAGACTTGGATGTTAACACTAGTTTCGCCGAGGAAATTTTATCCTTTCCTCTTTTATGAAGAAGTAAATTCGATTAGTAGTCTATTTTAGTAGACTGATCTTGACAGTGAAATGGCACCTTGCAGATGATGCAACGGTAGTCTATTCCAAGTAAATCAAACGTGTTATCCAAGCGTTGCTCAACAACCTTGCAACTTCAACTTGGAAGCCAGCCTCATGATTTGTTCTCGCAATGAGTGAGAGGTGTAAACAGATGGGCTGAGAAAACGAAAGCGAGGATCTTTCCAGAGTTCTAGGGAAGACCTTCGGTGTCTTTTAGAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CZ04	COP9 signalosome complex subunit 7a OS=Mus musculus OX=10090 GN=Cops7a PE=1 SV=2
Q2KI56	COP9 signalosome complex subunit 7b OS=Bos taurus OX=9913 GN=COPS7B PE=2 SV=1
Q9H9Q2	COP9 signalosome complex subunit 7b OS=Homo sapiens OX=9606 GN=COPS7B PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006644 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01399 all species →	PCI	PCI domain	Domain	Interproscan
PF18392 all species →	CSN7a_helixI	COP9 signalosome complex subunit 7a helix I domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000717 all species →	Domain	Proteasome component (PCI) domain	Interproscan
IPR045237 all species →	Family	Eukaryotic translation initiation factor 3 subunit M eIF3m/COP9 signalosome complex subunit 7 COPS7	Interproscan
IPR041481 all species →	Domain	COP9 signalosome complex subunit 7, helix I	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15350 all species →	COP9 SIGNALOSOME COMPLEX SUBUNIT 7/DENDRITIC CELL PROTEIN GA17	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008180 all species →	Cellular Component	COP9 signalosome	Interproscan
GO:0010387 all species →	Biological Process	COP9 signalosome assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12180	COPS7, CSN7; COP9 signalosome complex subunit 7	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.