Genomic Location: sc0000038_pilon:561954...582448
NR annotation: XP_029184506.2, lysine-specific demethylase 2B-like isoform X1 [Acropora millepora]
| CDS | |||||
| amic_s0038.g32.t1 | |||||
| Transcript |
| amic_s0038.g32.t1 |
| Protein |
| amic_s0038.g32.t1 |
| Uniprot term | Description | ||||
|---|---|---|---|---|---|
| Q640I9 | Lysine-specific demethylase 2B OS=Xenopus laevis OX=8355 GN=kdm2b PE=2 SV=1 | ||||
| Q6P1G2 | Lysine-specific demethylase 2B OS=Mus musculus OX=10090 GN=Kdm2b PE=1 SV=1 | ||||
| Q9Y2K7 | Lysine-specific demethylase 2A OS=Homo sapiens OX=9606 GN=KDM2A PE=1 SV=3 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | E3|E3 activity RING|PHD |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02008 | zf-CXXC | CXXC zinc finger domain | Domain | Interproscan |
| PF13621 | Cupin_8 | Cupin-like domain | Domain | Interproscan |
| PF17811 | JHD | Jumonji helical domain | Domain | Interproscan |
| PF16866 | PHD_4 | PHD-finger | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002857 | Domain | Zinc finger, CXXC-type | Interproscan |
| IPR050690 | Family | JHDM1 Histone Demethylase | Interproscan |
| IPR019787 | Domain | Zinc finger, PHD-finger | Interproscan |
| IPR041667 | Domain | Cupin-like domain 8 | Interproscan |
| IPR041070 | Domain | Jumonji, helical domain | Interproscan |
| IPR011011 | Homologous_superfamily | Zinc finger, FYVE/PHD-type | Interproscan |
| IPR013083 | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR003347 | Domain | JmjC domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23123 | PHD/F-BOX CONTAINING PROTEIN | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| GO:0003712 | Molecular Function | transcription coregulator activity | Interproscan |
| GO:0006357 | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| GO:0006482 | Biological Process | protein demethylation | Interproscan |
| GO:0032452 | Molecular Function | histone demethylase activity | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K10276 | FBXL10_11, KDM2; F-box and leucine-rich repeat protein 10/11 | EC:1.14.11.27 | Chromosome and associated proteins | ko03036 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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