Gene detail

Detailed information of amic_s0039.g3.t1 in Acropora microphthalma

Genomic Location: sc0000039_pilon:107676...119001
NR annotation: XP_029208412.1, putative acyl-coenzyme A oxidase 3.2, peroxisomal [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0039.g3.t1

ATGTTTTCTTCAGGGAGACGATTGCAATCGGCCGTTTCTAAAGTTAGATTTCAACTATCTGTTTTGCACTCGCGGAGCGGATTATCTCATACTTTCCCAGGCGATGTGATTCATTCACGGAGCTTACCATTGCGCAACACTCGTCCCCTTTCAAGTTCACAAGTGCGAATGGACGTACAGAAACTTAGAGAAGAGTGGGGGAATCCATCATTTGATGTTTTGCAAATGACACACCTGCTTGATCATGACAATCATGACAAGAGAGCTCAATTTCGTAAAATTCTATCCGAGGATCCTCTAATGACACCGAAGTACAACATTTCTGTGGACGAAGAGAGGGAGTTGGCGTTGCAAAGACTAAAGAAACTTTGTGACCAGGGATTCATTTCGGTGCTAGACTTCAAGAATAACCCTTTATGGATTTTCGCCGCTCATGAACTTGTTTCTGTTGTTGATGCGGCAATGGCAACAAAGATGACTGTTCAGTTTAACCTTTTTGGTGGTACTGTTTTGAAATTGGGAACGGAAAGACACCATGAAAGGTTTTTAAAGGGTATTGATACACTTGATGATGTGGGATGCTTTGGGCTTACAGAACTTGGTTATGGAAACAATGCAGTGCAGATGGAAACAACAGCTACATATGACAAATCAACAAAGGAATTTATTGTCCATACTCCTAACCCCATGGCACAGAAATACTGGATCACAAATGGGGCCTGCCACGCCCACCATATTATAGTCTTTTCCCAACTTTACATTGATGGAGTCAATCAAGGTATTCATGGTATTCTCGTACCTATTCGAGACAAGAACCTGAAGGTCGTGCCAGGAGTTGAGATTCATGATATGGGACACAAGATGGGTCTCAATGGAGTGGATAATGCCAAATTTTTTTTCAAAAATGTTCGTGTGCCACGAGAGAATCTGCTGAACCTTTATTCTGATGTTGCTGAGGATGGAACATACACCACAACTGTTGAAGGAAGCATCAGAAAGCGTTTCCTGACTGTTGCTGACCAACTTCTGTCTGGTCGGCTCTGTATTGCCAGTATGTCTCAAGGTGCAGCGAAAGCCTGCATTGCCATTGCCATCCGTTATTCAGCTACTCGTCTGACTGTGGGTCCTGATGGAAAATCTGACACTCCCATTCTCAAATACCAACTCCAACAGAATGCGTTGATGCCTCTATTGGCAAGCACATATGCAATAGACTTTGCTATGCATTATGTTAAGGATCACTGGGCATTTCAGGCAAGTGATGGTTCTGAACACGCCGATGTGGTAACCATGTGCTGTGTTATCAAGGCCATCTCTGGTTGGCACGTAGCGGAGACAGCTGCACTTTGTCGTGAGAGATGTGGAGGGCAAGGCTACCTTTCATGTAACAGATTTGGCGGTGGTATTGCTGGTTCCCACTCCTCCATGACAGCTGAAGGGGATAACGCCGTTTTAATGCAAAAAGTTGCAACCGAGAGGTTAATGGTTCTCAAGCCAACACTGCTAGAAGTTGCCGCAACGTACATACCAAGCTTTGTGAGTCGTATGTTTAGCTTGGCGAACCTGACCAATCAAAATTACCTTCAGTCTCTAATCGAGTCACGAGAAAAGGATCTCTTTTTGCAGTTGGGTTTAAAAATGACGAAAGCAGGAAAGAAGGGAAGGTTTGAAATGTGGATGTACAAAGAGCAAGACCTAGTCCAAGCAGCATCGCGGGCGTATGGTGAGCGTCTCATAAGTGAGTGCTTCGGTAGTAGCATTGATACAGCAGACCCAGGATTAAAGTCAGTGTTAAAGAAACTTCATCATCTTTATCAAATGAATGTCATTAAAAGAGATCTGGCTTACTTCACAACTTCTGGGCTTATGTCCACGTCAACTGGTGCACAAGTTGGAAAGGCTCATGCTGACCTTTGTCGAGAGGTAGCACCAGAGGCTTTGGCACTCTGCGACGCGTTTGGAATTTCGGAGGAATTGCTTAGTGCTCCAATTGCAAGAGACTGGATCAAGTATAACTCCATTGACAACAAAGGAGAAGTCTGTGGTTTGGAGTTTTAA

Transcript

amic_s0039.g3.t1

TGAGGAAAACTTATTTATTGTGATGTTTTATTAATGCTAAATTTATAGTTGTTCTCCTCATGTTTTCTTCAGGGAGACGATTGCAATCGGCCGTTTCTAAAGTTAGATTTCAACTATCTGTTTTGCACTCGCGGAGCGGATTATCTCATACTTTCCCAGGCGATGTGATTCATTCACGGAGCTTACCATTGCGCAACACTCGTCCCCTTTCAAGTTCACAAGTGCGAATGGACGTACAGAAACTTAGAGAAGAGTGGGGGAATCCATCATTTGATGTTTTGCAAATGACACACCTGCTTGATCATGACAATCATGACAAGAGAGCTCAATTTCGTAAAATTCTATCCGAGGATCCTCTAATGACACCGAAGTACAACATTTCTGTGGACGAAGAGAGGGAGTTGGCGTTGCAAAGACTAAAGAAACTTTGTGACCAGGGATTCATTTCGGTGCTAGACTTCAAGAATAACCCTTTATGGATTTTCGCCGCTCATGAACTTGTTTCTGTTGTTGATGCGGCAATGGCAACAAAGATGACTGTTCAGTTTAACCTTTTTGGTGGTACTGTTTTGAAATTGGGAACGGAAAGACACCATGAAAGGTTTTTAAAGGGTATTGATACACTTGATGATGTGGGATGCTTTGGGCTTACAGAACTTGGTTATGGAAACAATGCAGTGCAGATGGAAACAACAGCTACATATGACAAATCAACAAAGGAATTTATTGTCCATACTCCTAACCCCATGGCACAGAAATACTGGATCACAAATGGGGCCTGCCACGCCCACCATATTATAGTCTTTTCCCAACTTTACATTGATGGAGTCAATCAAGGTATTCATGGTATTCTCGTACCTATTCGAGACAAGAACCTGAAGGTCGTGCCAGGAGTTGAGATTCATGATATGGGACACAAGATGGGTCTCAATGGAGTGGATAATGCCAAATTTTTTTTCAAAAATGTTCGTGTGCCACGAGAGAATCTGCTGAACCTTTATTCTGATGTTGCTGAGGATGGAACATACACCACAACTGTTGAAGGAAGCATCAGAAAGCGTTTCCTGACTGTTGCTGACCAACTTCTGTCTGGTCGGCTCTGTATTGCCAGTATGTCTCAAGGTGCAGCGAAAGCCTGCATTGCCATTGCCATCCGTTATTCAGCTACTCGTCTGACTGTGGGTCCTGATGGAAAATCTGACACTCCCATTCTCAAATACCAACTCCAACAGAATGCGTTGATGCCTCTATTGGCAAGCACATATGCAATAGACTTTGCTATGCATTATGTTAAGGATCACTGGGCATTTCAGGCAAGTGATGGTTCTGAACACGCCGATGTGGTAACCATGTGCTGTGTTATCAAGGCCATCTCTGGTTGGCACGTAGCGGAGACAGCTGCACTTTGTCGTGAGAGATGTGGAGGGCAAGGCTACCTTTCATGTAACAGATTTGGCGGTGGTATTGCTGGTTCCCACTCCTCCATGACAGCTGAAGGGGATAACGCCGTTTTAATGCAAAAAGTTGCAACCGAGAGGTTAATGGTTCTCAAGCCAACACTGCTAGAAGTTGCCGCAACGTACATACCAAGCTTTGTGAGTCGTATGTTTAGCTTGGCGAACCTGACCAATCAAAATTACCTTCAGTCTCTAATCGAGTCACGAGAAAAGGATCTCTTTTTGCAGTTGGGTTTAAAAATGACGAAAGCAGGAAAGAAGGGAAGGTTTGAAATGTGGATGTACAAAGAGCAAGACCTAGTCCAAGCAGCATCGCGGGCGTATGGTGAGCGTCTCATAAGTGAGTGCTTCGGTAGTAGCATTGATACAGCAGACCCAGGATTAAAGTCAGTGTTAAAGAAACTTCATCATCTTTATCAAATGAATGTCATTAAAAGAGATCTGGCTTACTTCACAACTTCTGGGCTTATGTCCACGTCAACTGGTGCACAAGTTGGAAAGGCTCATGCTGACCTTTGTCGAGAGGTAGCACCAGAGGCTTTGGCACTCTGCGACGCGTTTGGAATTTCGGAGGAATTGCTTAGTGCTCCAATTGCAAGAGACTGGATCAAGTATAACTCCATTGACAACAAAGGAGAAGTCTGTGGTTTGGAGTTTTAAGTGGACATTTTGTGGCGTAAACGCTATTTTGTTGGTTCATCTTGTTTCAAGCTATCAAATGAATGATTTTGAGTATGTGGGGAATATGAATTAATGAGAAAAAAAGGTGTGTTGCGAAGATATTGCATTTCAAACTCTACAAAAAAGAAGACTGGTTAAGGGACCGTTCTGATGCTTGTGCCCAAATTTATTGACTCATTTTGTATTCTTAAATTTCAAAGTCATTCCGTCATAAGGAGCTCTTTCAGCAGGCTTAATTATTTTTGTGGGGACTCTATTTGCTTACCCCTGCCCGCTCTCGAAGTCGTAGTGATAAATATATTAATTACATAAGCTTGATCGTGCAAAGGGTTTTCGTCATTTTTAAATATAGAGTTCTTGTAGTCAGGAGATGGCATCGTTTAAAATGATCATTGTTTGTTACCAAATCAATAAAGTGATACTTGAAGACGTTTCGGCTAGACTCGTAACCCTTTATCAGATACTACAAAGCTTGATTTTGTTACGCTGTTACAAAAACGTTGTACCAGCGATATGCGGTGGCCAAACATAAGGGGTATTGTGGGGTGTCTGGAAAACCCGAATAGCAAATAGTCGCGAATAGCGGATATGAGTGTAGTCTCGAATAGGGGTGAATAGTGCCGAATAGTTGCAGATCGTACCAAATAGGGCACTCTTCGCAATCAACCTTGCAACATCGTGGAATTGGATTTTCCCGCCAAAAAGCATGGACGCATATCAGGGAAAAAGGTCTTTCTGAACATAATTTCACCTGTTTTCACTTTACCGGTGCAAAAGAGTAAATATGTCTTTATTAGGTAATCCTTCTGTTTTCCGTTTTCGTCATGTCGACGATGGACAGCCTTAGCCTGAGTCCTGTGAAGAAAAGGTAATTAATTCACTGAAATTTCGTAGTTTACTTGAATAATTAATTAATGCAAGATATAGGTCAGTCAGATGTTTTTGTTTTTAAAACCGGTTATCAGAGCAGCTTGTTGGTCTCTTTTCAGTTGATAAACTAAACAGAAATGTATTTTACTGTTTTTTTCACAGAGCGTGCATGGTCGAATCTATCTCTGAGGTGCGGAACCAGCGCGGTGACTACTCACGACTATTCGCCACTATTCCCAACTTTTCGCCACCATTCCCAACTGTTGGCCACTATTCGTATTCGACTATTCGCTATTCGGGTTTTCCAGACACCCGGGTACTATTTTGTTGTTCTTGTGAATTAAACATAGCAGACATTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O65201	Acyl-coenzyme A oxidase 2, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=ACX2 PE=1 SV=2
Q9LMI7	Putative acyl-coenzyme A oxidase 3.2, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=ACX3.2 PE=3 SV=1
O64894	Acyl-coenzyme A oxidase, peroxisomal OS=Cucurbita maxima OX=3661 GN=Acx PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003082 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02770 all species →	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan
PF01756 all species →	ACOX	Acyl-CoA oxidase	Family	Interproscan
PF00441 all species →	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046373 all species →	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan
IPR006091 all species →	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan
IPR012258 all species →	Family	Acyl-CoA oxidase	Interproscan
IPR036250 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR009100 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR002655 all species →	Domain	Acyl-CoA oxidase, C-terminal	Interproscan
IPR009075 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10909 all species →	ELECTRON TRANSPORT OXIDOREDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0003997 all species →	Molecular Function	acyl-CoA oxidase activity	Interproscan
GO:0005504 all species →	Molecular Function	fatty acid binding	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0006631 all species →	Biological Process	fatty acid metabolic process	Interproscan
GO:0033540 all species →	Biological Process	fatty acid beta-oxidation using acyl-CoA oxidase	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0055088 all species →	Biological Process	lipid homeostasis	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan
GO:0006635 all species →	Biological Process	fatty acid beta-oxidation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00232	E1.3.3.6, ACOX1, ACOX3; acyl-CoA oxidase	EC:1.3.3.6	Alcoholic liver disease	ko04936	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.