Gene detail

Detailed information of amic_s0040.g102.t1 in Acropora microphthalma

Genomic Location: sc0000040_pilon:1512250...1521256
NR annotation: XP_029209889.2, zinc carboxypeptidase-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0040.g102.t1

TTTGTTTCAGTCCAGAATATTCGTGCAAGTTCCTGCTTTCTACTTGATGAAATCCTATACTAATTGTACAATATTTTAGTAGCAGCTGCCCAAGTTATTAAAGAATATGTGGCACATTCCCATAGGGGGATCAGTAGGTGACTGTGGTCTTCTAATCGACTTGAGGGAACCAGCTCCTTTTAGGGGGAGGGTGCGGCTATAAGTTGGCGTTAAATAACATTTTCGTGACCCGACCGGCACGCAAACATATCGATTACGGATCAAGTCAACAAATCTTACATCTCGTGGTTTTTATAACAACACTTTGAACTATGTGTCAAAGAAAATGTCTCGCAAATCTCTGCCTATTCTTCGCATTTCTGGCGTCTTTGCTTTTTCTGCAATCAAGCGCTGAGAAAAGAATTACTTATTATGGTGATCAAGTTTTACAGGTTTTACCCAAGACACAAGAAGATGTGACATTTCTAGCAAACTTGTCCCGTGACAACAGTTTCAAGCTCGACTTCTGGACTGAACCCAGCCGGCCTGATAGGCCTGTGGACATTCATGTGCCGCGAAACAGAAGATACAGATTTAAGCAACTCCTAAAAAATGAAACAATTTCTTTCCGAGTGAAAATCAGAAACTTACAGAGGTCTATCAATGGCGAGAGGATGAGATTTCGATCTGCAGTACCGTTCAATGCAGCTTTCCACACGTATAGTGAGATCGTAAATGAAATGGAGCGACTCGAGCAAACCAACGAAAGTCTCGCTAAAGTGTTCACCTTGGGTCAAAGCTACGAGAACACGACCATATACGGGATCAAGATAACTTCAAACGTAACGTCCTCAAACAAGCCAGTCTTCTTCATGAACTGTGGCATACACGCCCGTGAATGGATTTCTATATCAACCTGCACGTACATCATGagagagCTTGTTCTTAACTACAACCAGGACAAAGCTGTCACACACTTAGTGGATACGTTGGAATGGATCATTGTCCCGGTTGTGAATGTGGATGGATACCAATACACACATACTACGGAACGACTATGGCGGAAAAATAGAAGACCGAATAAGAATTCGAAGTGCGTGGGGACAGACTTAAACCGAAACTTTAACATTAAATGGGCAACGGTTGGCGTCGAGGCTGATAAACCCTGCAGCCAGATTTTCCCAGGCACTCATCCGTTTTCAGAACCGGAGGCTCTTTACCTGGCGAGATATATGTACTCGATTAGAAATCGAATCAAGGTTTACATTGACTTTCACGCCTACGGCCAGCTGCTGATGTCTCCTTGGGGTTATACGACAGTCTATCCACCAACCTATAGCGCTAATTTTGCAGCTATGTTTCGTGCTGCCATGGCAATTTTAAAATCCAGAGGCACAGTTTATCGCTTTGGGCCCGCAGCCATTGCCATTTATAAGACATCTGGCGATGCCACTGATTGGGTGTACGGGACCCTTGGTGTCACGCATTCTTACGGAGTGGAGTTACCGCCTTTCATCTTAGCTCCGGGAGGTTTCATCCTTCATCCCGACAACATTGAGCCAGTTGGAATGGAGACTTTTGCGGGAGTCAAGGCAATGGCAGAGCATCGTTTTGAAGGAATAACAGAGAAACAAAAATATTCACGACAAAGAAATGCCAGTTGATGGGACAGATAACGTCACAGATGTATTCGGAAAAGGCTAGCTTGAGACTTTAGTATCCCACAAGGCCCTGCACCTCTCTGATATGACGTCAGGATTTAACTTTCTGACGTCAGGATCCAACTCGTTTCCATGTCCCTCGATAATAGCTATTCCCTTCCATTTCTGAGGGTTTATGAATCTTCGACATAATCAATTTCCTACCGTGTTATGTTCACGTCACAAAGAATCTCTCTGACACTTTCACCCCAAAAAGTAGCGAATGAATTTTTTAATTAAACGACGACAAGTACAAGAGTGTCATCAATGCGCCTATTAAGCAATTTAAAGGCGGTCAGACCCTAACCATACTCGAGGTCAGTTTTAACGAAATCATAATGTTGTGGAAGGCAAATGAAAGTTAAAAGAGTCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
C5FVN6	Metallocarboxypeptidase A OS=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) OX=554155 GN=MCPA PE=3 SV=1
B6V865	Metallocarboxypeptidase A OS=Trichophyton tonsurans OX=34387 GN=MCPA PE=3 SV=1
B8XGR3	Metallocarboxypeptidase A OS=Trichophyton equinum OX=63418 GN=MCPA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000439 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00246 all species →	Peptidase_M14	Zinc carboxypeptidase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000834 all species →	Domain	Peptidase M14, carboxypeptidase A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11705 all species →	PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004181 all species →	Molecular Function	metallocarboxypeptidase activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0040.g102.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.