Detailed information of amic_s0040.g108.t2 in Acropora microphthalma

Genomic Location: sc0000040_pilon:1655036...1695306
NR annotation: XP_044182646.1, LOW QUALITY PROTEIN: hemicentin-1-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B8VIW9Fibronectin type III domain-containing protein OS=Acropora millepora OX=45264 PE=1 SV=1
P20241Neuroglian OS=Drosophila melanogaster OX=7227 GN=Nrg PE=1 SV=2
Q96RW7Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000412 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13882
all species →		Bravo_FIGEYBravo-like intracellular regionDomainInterproscan
PF07679
all species →		I-setImmunoglobulin I-set domainDomainInterproscan
PF13927
all species →		Ig_3Immunoglobulin domainDomainInterproscan
PF00041
all species →		fn3Fibronectin type III domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003961
all species →		DomainFibronectin type IIIInterproscan
IPR036116
all species →		Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR007110
all species →		DomainImmunoglobulin-like domainInterproscan
IPR051170
all species →		FamilyNeural and epithelial cell adhesion domain-containing proteinInterproscan
IPR003598
all species →		DomainImmunoglobulin subtype 2Interproscan
IPR026966
all species →		DomainNeurofascin/L1/NrCAM, C-terminal domainInterproscan
IPR036179
all species →		Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR013098
all species →		DomainImmunoglobulin I-setInterproscan
IPR003599
all species →		DomainImmunoglobulin subtypeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12231
all species →		CTX-RELATED TYPE I TRANSMEMBRANE PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0043005
all species →		Cellular Componentneuron projectionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0040.g108.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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