Gene detail

Detailed information of amic_s0040.g110.t1 in Acropora microphthalma

Genomic Location: sc0000040_pilon:1726538...1742386
NR annotation: XP_044182348.1, GRAM domain-containing protein 4-like isoform X2 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0040.g110.t1

AAGGTCGCAGAAGATTCAGGGACGAAAGATGGAAAAGAAGACAAAACATCTTTTGGAAATTTTCATGTTGCGTTTCATCGTAAAAGTGGCTCACATGTAGTCCACGAAGATAAGATTCACAGTCATGAAAATCTAAACACCCCTTCCACGGAAAAGGGAGCGAAAAGTTACACAAATGGCGATGAATTATATTTGGACTGTAACGAGGAATTTCCAATTGTAACACGGAGCAAAGTAGTGGATGAAGATGAACCAAAGTCGAGGAGTGAGTCTTTAAGCCGCGAGAAAAGGGCAAAGGATCAACACACAGATAATTTTCCAATCTCTGAAAGGCAGATTTATGAAATGCAGCTTTCTCAACTCCAGGAGCAGCTGGTGAACACCATGATAGATTATCAGGAAGCGTGTGACCAGTTAAAGAAATTGAAATCCATTGATGTTCACAAACTGCAAAAGGAACTACAGGAAGAAAAGGAAAAGAATTCAGATCTGAAGGAGAAACTCAAACGGAAGCAAAAAGCTCAAAGCTCAAAACTGCAAAGAAAAAATGCCAGTCGAATTCATCTTAATAACCCTCAGAATGTGATGTTAGATCAAAATTCAGGTGATGACTGGGTTGATTTAGCATCAGATGAGGGGCTGGCATCACTACGTGATACAGAGGACATCATGATGGCTGGAAGTAGCTCTCCCTCACAAGAGGAATACATGTATGATGATGTGGATCATGGAGGTCATCACAGACATATTCATGCTAATAATGTGGGAAGACCAGAGCAGCAGGCTATGTGTAGCCAAGACAATCAGCCTCACAGATTCCAGAGAGTCAGGGCAAAAGTTGAGCTGTGGAAAACAACAATTGTTGATCTGATCGTTGATAGGTTGTGGGACTTTGTTAATGACGAACCTGAAAATTCGGATGAAGAAGACGACGAAGGAGAACCCTTGGCTGTAAAAAAATTAAAGGAAAACATTACACGATTTAAGAACGGAATTAAGCCCATCACCGGCTTTGTCCAATCTATCCACGGTGTTCTCTCTTGGTCGAATCCAACAGCCTCTTTCTTGATATTCTTGGTGTACATGTATTCAGTCTGGCACGGGTTTCTTCTTTCCTTGATACTTTTTGTGCTCATCTGGAAACTTTTCATGAATTACCTTCACGCTAAAGGGCTTGCTAAGAGGCTGGGATTTGTCGAGGAAGAGAAAACGGAGACGAATTCTTCAGATGATCAGAGCTGGTCTGACAAATTTCAGTTGGTTTTGCAAGTGGCAAGAAAAGTGCAGAATACTCTCGGGAAAATGGCGGACTCCTTAGAGAAGTTGAAAAAtttgCTCATGTGGCAGCATTCTGTTGCTTCGCGGAAATTGTTTTCTTCTCTCTTGATGGCTCTTTTGGCGTCCTTACTGCTGACAGGAAGGACTCTGTTTCTCCTAACAGGGTTGTTTTTGGGTATCAAGCTGTTTATTGTGAACCCAATCCAGCATCGATTTCCAAAGGTCAAGAAGCGCTATGATACAACAGAAAAGCTTTGGAGAGAGCTCCCCACAGATGCAGATCTTGCTGCAAGAAAGACCGAGACGGCAAGCAACCAAGAAGCACCTCCTCGTGCCTCCACTGTCACGAGCTCCCCATCATCGCCTAGCGACGGCCATTCATCTGAGCAGTCACAAAGTCCTATTATTAATCCCATCCTTGAGAAATTCAAGCTACCACCGAGTGAACCTCTTGTGCAAGGATGGGAAGATGGTGTAAGGTGTATAATGCTTGACAAAGATAAAACCTTCTCCCCCGTTATAAAACACGGAAGATTATTTCTTACTCAGAGCCACCTTTGTTATGAAAAAGCCAAGTCCTCGTTTGGTAAACACATTGTAATTCCGTTGGACAAAATCACAAGCATAGCTAAGGCCAAACCGATTCCGATCATGCCTGGCACTGGGATGGCGATTGAAGTTTGTGTCTCTGGTGTCGACAAGCCGTATATATTTGGTGGAATTATCGGCAGAAGTGAAGTCTATGAGAGCATCAGATCCACAGGACGAGCGGAAAATCATCCATGGGCCCTTGCGTGACAACATCTGTTCTGGCTCGCTGGCTGAGTCCGACTAACAATCAACCAATCGACCGACCAACTGACTGAGCATCTGGCAGAATGACCGATGTACATACTGATAGATTGGCCAGCTGGTTGACTAAGAGACAGATGGATGGGTTGACTAACAGACCACGGACGAACGAACAGACGGACTGGCTCGTTCACTGACCAACTGACAAGCAGACATATTGAATTACAAACCCCACTGACTGGCTGAACGAGTAAGTGGTGAGCTGACTGACAGACAAACAGGTTGGCTGGCTGGCTGTCTTAGAGACTTACTGGATGATTGCGAGCCAGACGGACTGACAGACCGACCAACTAACTGAGGGGCGGGTTGGGTGGCTGACGAACTGGTTAGtttattgattgatcgtttggttggtttattaattTGACGGACAACAGCCGTTCGAATGAAACAATTTCTCGATATATCTTGCGCATTGAAAATAGTTTTTTAGAATTCAAGCTGTTTCTCCATACTAGAACTTATATTTTTAATGGTATTTTATTAGTTTTGTAATATGAAAATAAGTGCAATTTGTAACCAGGTTTAGTCATTGTAATTATTCTTATGCCTTCGGAAATTTGAACATAATATGGTTTTGTAGTCCTTTAATAAGAATAAAAGAGTATAATTTTAACTGATACTAAAGAAGCTAGATTACTTCTTATATATGATTTAAATAAACGATTTATTATCAAACAATTACGAGGGAGAAATGCGTAAAGTGTTGGTGTATAAAGACGGCGTTAGGATTAGACCATTCTATTTTCGAGGTTGAAGGTGGCAGTGCAATTgaaaaaagaaagaaagaaagaaagaGATTGTTCACGAAGTGTAGTGACAAAAATATAGAGAAAAAACCGCGTAAACAAGTGAGCGCAGAAAATTTAAAAGAAATAGGAATTTCTAAAAAGCTCAATCACGATAAGGCTCGTGCATGGAGAAGAATCTTTCCATGCTTTGTGTTGGTTAAGACAAAATTCTTGAGAATATTATCGTACTTAACGTAATTTATCCACCGCCATTCCCAAAAACTAAATGGTCCATGTTTAACTCTGAAACCCAAACTTTAATTAACAATTTTTGTACGCATTCAAGTCGCACTGATTAGTTCAAAGCCAGCCATTGGCGCCTGCACCAAGCTGACTACGCCTAGAATACGTGTAAAAATTGATTACGCTCGAGGAAACACAAAACGAATGTTTCCCTATGGGAATGAGTTGTGACAGAGCTTAAGAAACGGCTAATTGGAGTGAAAACAAAAGTATAAGATAAACAAAAATTAAAACAGCGTGTTTTCGTGAGCACATCGAATAGTTTTGCACGTGAAACTGGGAAGAACGCACGCATTTGTTTCTCCACACGCGCAATTGACGTTTTATTTTGCAAAATTATCATTTTTCGTCTGGTTTCTTACACAATGATGTTTTGTTTCGTGGATAGTGTGGCCACATGACGGTGAGTTTTCTATTTTTTTTTGTTAGCCTTTTCATTTAGCTCAAATGCTGTTACTTTAGTTAATTATGCATAACCAACACCATTCTCCCTAAATATATTCTACCCCACAATATGTATAGATTTTGAGCACAACCCACTTGCGAAACGACATTTTTGTATATTTAAGAGGCGAATTTTTTTGTGACTTAAGTTTGGTAAGTTTTAATTTTTTTTTAATAAACACTCTTCCAATCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O42976	Uncharacterized membrane protein C20F10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC20F10.07 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002180 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02893 all species →	GRAM	GRAM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037847 all species →	Family	GRAM domain-containing protein 4	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR004182 all species →	Domain	GRAM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37402 all species →	GRAM DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006915 all species →	Biological Process	apoptotic process	Interproscan
GO:0034164 all species →	Biological Process	negative regulation of toll-like receptor 9 signaling pathway	Interproscan
GO:0043280 all species →	Biological Process	obsolete positive regulation of cysteine-type endopeptidase activity involved in apoptotic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0040.g110.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.