Gene detail

Detailed information of amic_s0040.g113.t1 in Acropora microphthalma

Genomic Location: sc0000040_pilon:1771881...1779327
NR annotation: XP_015780625.1, PREDICTED: cytochrome P450 27C1-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0040.g113.t1

CAGTACAATTGCGTGACAGTAAAACCCAGTCTCTTCGTTTTTGGTATTGACAAAATGACCAGGCAACTCCTTTGATTGGAAAGGATAATTAGTTTCCACGATGTTTGTGGCTGCAACTCGCAAGAATTGTCTCTCAACGTCTCTACGATGCTACATTTCAGCCACTTTCTGGCGAACGCAAACAACAAAACCCGCCAAAGCTCAGCTGGAGGAAAGCGATTCGTTCAGTGACTCGGCAATTTCCGAAGTTAGTCCTTCACAAGTGCGTGAGTTCGAAGATATGCCGGGTCCCAAAAGAGGCGTGATGTCTTTTGTGGAGTTTTATCGCAAATCTGAAAGCCTCACCAAAGGATACAAGCTCAGTGAAGCTCTCTTCGCGAAATATGGTCCTGTTTATAAGGAGAACTACGGCGGTGAAACACAAGTACACATTAGCGATCCTGATGATTTCGAGACGGTTCTACGTGCCGAAGGAAAGTATCCTCGAAGGCTGTTGATGCAGGTTTGGTTAGAGCACCGTGTAAGGAGGAATTATTTCCATGGAATAGTACAATTAAATGGAGAAGAATGGCACAGAATAAGGCGAAATGTTGCTCCCAAAATGATGCGACCAAAGGTAGTTGGAGAAAACCTTGATAACTTCAATCTAGTAGCTGAGGATGCTATGGCAAGATTTGTGAAGCTGAAGGAAGCTTGTGGACCAGCGGATCACATACCTGACTTAGAAGGAGAGTTAATGAAATTTACCCTGGAAAGTATTGGAACAATGGCATTTGACACTCGCTTGGGACTATACTCAGATCCTCCGTCACCTGAAGGCCTGAAATTTATTGCTGCAGTTCACGACTTTTTTGATCTGTCTCAGAAACTACTCCTTAGCATTCCTAGTAATCTAATGCGACCATACATGGACACACCAGCACTTAAGAAATTCTTTACGGCAGCAGATGAAATCTTGGACATCGGTGAGGTCTTCGTTAACAGGAAGATGAAAGAATTGGAAGAAATGTCAAACAAGGGAATTGAATCTCCTGGAAAAGTGGTGCCCTTGCTGACATACTTACTCACAAAGGAAGAGCTTTCTCTGGAGGAAGTTAATGGCACTGCGATCGATGTAGTTACTGGTGGTGTTGATACGACTTCAAATGCGCTTCTATGGATGCTCTATCATTTGGGAAGACTTCCTCACATCCAAGAAAAACTTCACGAGGAGGTCGATCGAGTCGTTGGAAAAGATAAACACATTACACCTGATAAAATAGCGAATCTGTCTTATCTAAAAGCTTGTCTCAAGGAAAGCATGAGGGTGACCCCAACTGTCACACTCAATAGTCGAATATTGGAGCAAGATGTCGTTTTATCAGGATATCGTGTCCCGGCGAACACCCATGTACTTTTGGAAATGTATAGCGCGGGAAATTCCGAAAAGTATTTTAAGAACGCTTCAGAATTCAAACCTGAGCGGTGGCTGAGGGAAAACAAAGGCCAGAATCATGCTTTTTCAAGTGTACCATTTGGACATGGAGTGCGGATGTGCATTGGTCGCCGCATCGCAGAAATCGAAATTTACGTCCTCATTTGCAAGTTACTCCAAGAATTTCGCATTGAATACACCGGCGAACCTCTGGAAATCCTCCAAAAGTTGGTATCATGTCCCGATAAGCCAGTGAAGGTGAAGTTCGTCGATCGCGATTGACTCTCTTTGGCTCACGTTTTGAGGACGCTTCAAAGAAGACGGAGATTGATGATAAattagtaataatcagagattagaaaagtacgttccatgtgttttgttgccttttaactggtatttgcgtgtttttttggctacccacctaatgcagacatggtcataacctcgtacttttgaaattcgcaataaagcagattgagatagtctcaattcattttgtctggcatcggatcgataccagcatcacattgaggctaagtgtgtcacataggccaagatggcggcctaagcctgaaataaGTAAGTAAGTAATGTGCGTTCGGTCGAACGCCAATAGTATACGAGTGCTCACCAACCACAACGGTCAAAAACCTTTGAATAACTGGGGTCTGGTTTTGAGGTCACCTGTACGGTCACCTGTCATTAGTCGACCTCAGCATCAGATGAAAACAAGATACACAGGGCACCCAATCTTAAATAAAGTTAAACCAGTGACTTAAAGCCTTTACATAAGATCCCGTTATCTAGGCTGGCTCGGGTGTTCCGAATTCAACTCCATTAGTCTTGGTAACCCGTCAATTAGCTGGATGCCATTGTAATGGGATTTGAAATCTGGGCATGTACGAATAATGCACCTTACATTTATACTTAAGCCAATACTCGCTTCATGGCTGTTATTCAATCACACCTATATCTGTAATAATAATCTTAGGGTGAAGTAAAAATGATCATTTGTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P17178	Sterol 26-hydroxylase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Cyp27a1 PE=1 SV=1
P48416	Cytochrome P450 10 OS=Lymnaea stagnalis OX=6523 GN=CYP10 PE=2 SV=1
A8WGA0	Cytochrome P450 27C1 OS=Danio rerio OX=7955 GN=cyp27c1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000329 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00067 all species →	p450	Cytochrome P450	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002401 all species →	Family	Cytochrome P450, E-class, group I	Interproscan
IPR001128 all species →	Family	Cytochrome P450	Interproscan
IPR036396 all species →	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan
IPR017972 all species →	Conserved_site	Cytochrome P450, conserved site	Interproscan
IPR050479 all species →	Family	Cytochrome P450, families 11 and 27	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24279 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004497 all species →	Molecular Function	monooxygenase activity	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016705 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0040.g113.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.