Gene detail

Detailed information of amic_s0040.g152.t2 in Acropora microphthalma

Genomic Location: sc0000040_pilon:2250976...2264011
NR annotation: XP_029192888.2, uncharacterized protein LOC114959133 isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0040.g152.t2

ATGGCGAATATCAAATCATCCGAAACTGAAGTACCCGTCACACATGGAGGCACAAGCGCTCGAGGAGTTGGGGTTAAAGTTTCTGTTCCCTCTGCCGATGGAAATGGAACTGAAGAAAGCTGGGGTTCTGCAAACTGTAAATGTACAAGTCACTCTTCCAACAAAGTTACACAACAAAGCAAGCATAGCACCTCCCAAAATTGCTGCTGCAGTCGCGAGGTACATGTGCCTGGTATGGTGTATCAGCATGTTGCACCACCAGTGACAAGTGTGATGATTGACGGGTCAAAATCAGCATCTCAAGACTCTAAACTGGCATCGAAACACTACTGCTCTAGCTGCCCCCCAGGACCACATACTCACCATGTATACTCTCCACCTGGCTGTCATCCACACCAGCCTGCGGCATTCATGGAGCATGCTCACTGTGGCTGTCAGCCGGGATATGTGGATGGTCATTTTCACTTCCCTCATCAGCAGGCACCTGGGCGACCTGTTGCAGTGATGGCAGCCCACCCACCTCCTCCCCTCCTCGTACGACCTGTCCAACCACAACATATGCAGCAACATCAGGCTATCCTTGAGCAAGAACTTCGTCCTTATTTTGATGGCAAATGGAAAGGACTTGGAGATCCTCATTTTGGGGCAAGAGGTCAGTCCTCAGAGGGATCAATGGGTGCAGGTGCCTTCATCAGTGAAACACAAACAGCGTCCCAGCATCATCCTCTGTTTCATCATGGCATTTGCCAATGGCCAGGCTGTGAAGCTTTCTGTGAAAATTTTCAGCAATTTATGCATCACCTTAACACAGATCATGCCCTTGATGAAAGAAGCACAGCTCAAGCAAGGGTACAAATGCAAGTGGTAATGCACCTAGAGCTTCAGATGAATAAAGAGCGTGAAAGGCTATCAGCAATGATGAATCATCTTCACACGCCAAAGGTTTCGCCAAAGTCGCCAACTTCAAACTCTGAACTTGAAGACGAGGTTTCTAAGCACTCGCCTCACTCTCAAGCTCCGCCTCATCATCTTCATGATTTACACCCCTCTCCCCACAGTCATTTGTCCACACTGGATGGTGCTCCATCGGCGCAACATTCAACAAATCTTACTACCAGACAGGAGGTTCCCTTGTCACCTCAAAGCCCTCTCCCGACTATGGGGTCTCCCCTAAGGAAGCATCCCCTCACCCCACCCCCTAACATCACTGTGCGTGACATCGCAAATTCCGCGGTTGATTCCATTGCGATCGTAGGCACAGCAGGCTGTCACATGATGGACGAGAAGCCTCTTCACGTGAAAAGAAGGAAAGGAGACCCGGATGGAATTGCTTTAGACATCCAGAGATCAGCAGACTTTTATCAAAAGGCTGATGTGAGACCACCATTTACTTACGCGTCCCTGATTAGACAGGCTATTTTAGATGCCCCTGATCAACAATTGACGTTGAACGAAATTTATTCTTGGTTCGTTCACAAATTTGCTTATTTTAGGCGGAATGCGGCTACTTGGAAGAACGCTGTCCGTCACAATTTGTCTCTTCACAAGTGTTTCGTCCGCAAAGAGAACGTGAAAGGAGCAGTGTGGATTGTCGACGAGGATGAATACATGAAACGAAGGCCACAGTCGAAAGTAACTCACAGTGCAGCAAGGATGGTGAGGCAAGAGAGGGAACGATTGTTGCAGCAAGGCTCCTTAGGGGGACTCCCCACCCAAGTGAATTTGCTTCCAATGGTTACCCCTAGTTCCAATGACGTCAGTGATGAAGAAGGCTCTAGTCACGAGGAAAGCCGAAAAGAAGGCTCGGATGAGGAAACTGGGGAAGAATCACCGCCCACGAAACGCAGGAAGCAAAAAGAGGGCGAAGAAGCAGAAGGCGTGGTCGGCGGAATCACGAAGTTAGTGGAGTTCTGTTCAAAGGATATCAACAGCCAATTGTCTCAATCTCAAGTTCAGGTCAAGTTGGAGCCTCCAGAAGACGGACCAATTACGGCATTGAACGGCGATAGTCACTCAGAGGAAGGTCAATACCATTCTCTCATGAACGGGAGTAGTCTGATGGAGACTGGAACTAGCGAAGATGAGGTTAGGCAAGGCAGATCAGCTGATAACGGACTATGGTCTTGTAACGAGCTCTGCAGAGAGGACAAGAAACGAAGGACCACTTCAACTTACGATTGCGCAGTAGAGACGATAATTGCAACTTGA

Transcript

amic_s0040.g152.t2

CACGATGCAAAGCGAGGCTTTGTTTGGGCCTCAAAGGAAATCTATCAACAACAACGCGCCACAATTGTTTAGTAAGGAAAATTCTGCAAATTTCTGTTCCCGATCGAGAGAAATCCGTGTGAAAAGTTTTTCAAATTTTGCCAGACAAATCAACGTAACGCCAGTGGAGGTTTGATGACGGAAGAGACGGGAATTCAGCTTGCATCATTGAAATTTATCGCGGCCAAGCCGTAAAATCTGTCCGTTCATTGGAAAAGTGACGGGTGTTCAGAACCGAACGTTTTGTGCCGCGCAATATCCTTGATTTGAATAGCGATTTCATGGCGAATATCAAATCATCCGAAACTGAAGTACCCGTCACACATGGAGGCACAAGCGCTCGAGGAGTTGGGGTTAAAGTTTCTGTTCCCTCTGCCGATGGAAATGGAACTGAAGAAAGCTGGGGTTCTGCAAACTGTAAATGTACAAGTCACTCTTCCAACAAAGTTACACAACAAAGCAAGCATAGCACCTCCCAAAATTGCTGCTGCAGTCGCGAGGTACATGTGCCTGGTATGGTGTATCAGCATGTTGCACCACCAGTGACAAGTGTGATGATTGACGGGTCAAAATCAGCATCTCAAGACTCTAAACTGGCATCGAAACACTACTGCTCTAGCTGCCCCCCAGGACCACATACTCACCATGTATACTCTCCACCTGGCTGTCATCCACACCAGCCTGCGGCATTCATGGAGCATGCTCACTGTGGCTGTCAGCCGGGATATGTGGATGGTCATTTTCACTTCCCTCATCAGCAGGCACCTGGGCGACCTGTTGCAGTGATGGCAGCCCACCCACCTCCTCCCCTCCTCGTACGACCTGTCCAACCACAACATATGCAGCAACATCAGGCTATCCTTGAGCAAGAACTTCGTCCTTATTTTGATGGCAAATGGAAAGGACTTGGAGATCCTCATTTTGGGGCAAGAGGTCAGTCCTCAGAGGGATCAATGGGTGCAGGTGCCTTCATCAGTGAAACACAAACAGCGTCCCAGCATCATCCTCTGTTTCATCATGGCATTTGCCAATGGCCAGGCTGTGAAGCTTTCTGTGAAAATTTTCAGCAATTTATGCATCACCTTAACACAGATCATGCCCTTGATGAAAGAAGCACAGCTCAAGCAAGGGTACAAATGCAAGTGGTAATGCACCTAGAGCTTCAGATGAATAAAGAGCGTGAAAGGCTATCAGCAATGATGAATCATCTTCACACGCCAAAGGTTTCGCCAAAGTCGCCAACTTCAAACTCTGAACTTGAAGACGAGGTTTCTAAGCACTCGCCTCACTCTCAAGCTCCGCCTCATCATCTTCATGATTTACACCCCTCTCCCCACAGTCATTTGTCCACACTGGATGGTGCTCCATCGGCGCAACATTCAACAAATCTTACTACCAGACAGGAGGTTCCCTTGTCACCTCAAAGCCCTCTCCCGACTATGGGGTCTCCCCTAAGGAAGCATCCCCTCACCCCACCCCCTAACATCACTGTGCGTGACATCGCAAATTCCGCGGTTGATTCCATTGCGATCGTAGGCACAGCAGGCTGTCACATGATGGACGAGAAGCCTCTTCACGTGAAAAGAAGGAAAGGAGACCCGGATGGAATTGCTTTAGACATCCAGAGATCAGCAGACTTTTATCAAAAGGCTGATGTGAGACCACCATTTACTTACGCGTCCCTGATTAGACAGGCTATTTTAGATGCCCCTGATCAACAATTGACGTTGAACGAAATTTATTCTTGGTTCGTTCACAAATTTGCTTATTTTAGGCGGAATGCGGCTACTTGGAAGAACGCTGTCCGTCACAATTTGTCTCTTCACAAGTGTTTCGTCCGCAAAGAGAACGTGAAAGGAGCAGTGTGGATTGTCGACGAGGATGAATACATGAAACGAAGGCCACAGTCGAAAGTAACTCACAGTGCAGCAAGGATGGTGAGGCAAGAGAGGGAACGATTGTTGCAGCAAGGCTCCTTAGGGGGACTCCCCACCCAAGTGAATTTGCTTCCAATGGTTACCCCTAGTTCCAATGACGTCAGTGATGAAGAAGGCTCTAGTCACGAGGAAAGCCGAAAAGAAGGCTCGGATGAGGAAACTGGGGAAGAATCACCGCCCACGAAACGCAGGAAGCAAAAAGAGGGCGAAGAAGCAGAAGGCGTGGTCGGCGGAATCACGAAGTTAGTGGAGTTCTGTTCAAAGGATATCAACAGCCAATTGTCTCAATCTCAAGTTCAGGTCAAGTTGGAGCCTCCAGAAGACGGACCAATTACGGCATTGAACGGCGATAGTCACTCAGAGGAAGGTCAATACCATTCTCTCATGAACGGGAGTAGTCTGATGGAGACTGGAACTAGCGAAGATGAGGTTAGGCAAGGCAGATCAGCTGATAACGGACTATGGTCTTGTAACGAGCTCTGCAGAGAGGACAAGAAACGAAGGACCACTTCAACTTACGATTGCGCAGTAGAGACGATAATTGCAACTTGAAATGAAACGTTTGTGACTATTTTAGAAAGGAGGATAAAAGTCAGTGAGTCTCTCTGTTAGGGCGGTTAAAAGTGAGGAAATTTCCAGTTGTGAGAAAATCAAACGATTTTGAGATTGAAAGTTACAAAAACGAACAATGACGCGAGCCTTTTTTCTTTTAAAGAAAGTGATCGATAGCTGATGTATTTTTTTCATGGTTTCTGTTGAAGATTAGTCTTAATCCCTTTTCGTCGATttggccgtttttatgctagagacgtttacgttgtctaagacgataaaaccgtctcgagacgactttaacgtctagtataaaaacggtaaacacgacagatgcatttaacgtctgacgacttttacgtcttctttttaagtgtgtctcaaagacgcacttaacagacgactttaacgtctcTAGCATAAAAACGGCCTTTGTTTCTTTATTGTCTGTGATTCTACTCTATTTGACAAGGACAATCGCTAGATGCGGCGTTAGAGACGAAAAATATTTGATAAAATTAGGTTTTAAAAATACTTTAGTTACATTGAAGCTGAAACGTAAGAGCAGAATATTTGTTGAAATGTTTGTGAAAATATGACCAGTTAAATTCGAAATCTTTGCTTCGAATGGCGGAAGCTTCATTGCTTGCCAATTACCTAGTATCTCCTGATGCGCTAAGGGTACAGGAAGAAAAGATTCACTAAAGTTCGCTTGTGTGAAGAGGGGACTACTGTTCCTACGCCATCGTGGTTCCCCACTGTGGATCGTGTTGGGTTTGGTCAGAAATACCGCTAAGTTAACATTTTTTCGCCATTTGAAATCCTTTCTAACTTAAAGATCTGAACAAAAATTGACATTCCTTGTCCTTATCCTGTGTAGTTGTCGTCTATAGATCTCAAAGGATTTAGCCTTTCTAAAAGGTGTTATTTAACTAGTGTCTCCAAGTAGCCATTGTTAACTAAGTTAATTGATTTTTTAGTGTTTTTTGTCAAGAATGAATGGTCCAAGGCCAATTATTTTGTGCAAATACTAATGATGATGATGATGAGTTTTAATTATTATTAATTAAGTAAGTTAAGAAGAGAATTAAAGTTGACAATTGACA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4IFD2	Forkhead box protein P1 OS=Bos taurus OX=9913 GN=FOXP1 PE=2 SV=1
Q58NQ4	Forkhead box protein P1 OS=Gallus gallus OX=9031 GN=FOXP1 PE=2 SV=1
Q9H334	Forkhead box protein P1 OS=Homo sapiens OX=9606 GN=FOXP1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002206 (this species only)
Transcription factor family	Fork_head · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16159 all species →	FOXP-CC	FOXP coiled-coil domain	Domain	Interproscan
PF00250 all species →	Forkhead	Forkhead domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001766 all species →	Domain	Fork head domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR032354 all species →	Domain	FOXP, coiled-coil domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR050998 all species →	Family	Forkhead box protein P	Interproscan
IPR030456 all species →	Conserved_site	Fork head domain conserved site 2	Interproscan
IPR047412 all species →	Domain	Forkhead box protein P1/P2, forkhead domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45796 all species →	FORKHEAD BOX P, ISOFORM C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001227 all species →	Molecular Function	DNA-binding transcription repressor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0040.g152.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.