Gene detail

Detailed information of amic_s0040.g190.t2 in Acropora microphthalma

Genomic Location: sc0000040_pilon:2743476...2747540
NR annotation: XP_015760990.1, PREDICTED: YY1-associated factor 2-like isoform X2 [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0040.g190.t2

CTTTGGCTGTATACATATACGCAAACTATAAACGGGGCAAGGTAAAGGCGAAGAATTCCAGGGAAAGATTGAGATATTGTTCTCATCTCTAAGGCTTCTTTTTGGAAGGTGATGGAGGAAAAGCTGGACAAAAAGAGCCTTAAGTAAGTAGTATAAGGCTTTTGAAGGGTGCGTAAAGTAGTGCGACCAACCATGGACGATAATTATTGGGATTGCAGTGTTTGTACGTACAGAAATGGTGCCGAAGCTTTCAAATGTGCTATGTGTGATGTCAGGAAAGGAACTTCAACGAGGAAACCAAAACTGAATTCACAGCTAGTTGCCCAACAAGTAGCGCAGCAGTTTGTTACCTCACCACCTCCTTTAAAGAAGGTGATGACTAAGAAACCTTTCAAAAAATCAAGGCCCAAGTTAAAAAATGTTGATAGGAACAGTGCACAAGACATGGCTGTCACTGTAGGAAATATAACAGTCATAATAACAGACTATAAACTCTTAAAACCAGAGAATTCACCCTCGGTAACTCCCGATCGCAATTCTCCAGGTCTCATGTCTGAAGACGGCGCTGACAATCCTGGTTCATCATTTGGTACAGAACAAACCAATGGTGTAAATAATCAAGAGGACAGTTCATGACATTTATTTGTATGTACTTTGTTAATAGGAGCATTTTCAAATTTCTAGGTGCAGCATGGTAGTTAGTTGAGTGTGGATCTATGTTTAGGATGGTTTACCCAGTGGGACAAATGCAAACCTTCTTAAGCTGCCTTTCCTAAGTGCTGATAAGATTGTCCAAACCTGGTACAACATATGTCCTAGTGTAAGCTGAAATGTAAGACAATAATGGCACATCAGCCCTTTGGAAATCTAGCTTGTTTCACATGCTCTGACTTGATTCTTAGTCAAAATCTATTAGTTTTCATTTTTATATTATATTTAGCAGTGATTGCTGAAGTGCTCAGATTCAGAGAAACGTTTTTCATCCCTTTTTATGGCAAAAGACAGTGTCCTCTAAGATGGCTTCCTAATGCATTTTCAGGCTTCTAGGAATACTTGTTGCACCCCATTGCCATTTGCACGCCAAGATGTTGGGCCAGTTTCTTTAGCTCCTTTTAGTTTGAGTGGAGAACTGTTCCATACTTTACTTCCAACCAGGACTCAGTTTTTGTTGTACAATACTCATCAATAATACTACTGTGGTCCAAGAGTATGGCTAGGTTAGAAGAGGAGCTACAAAATTGTCTTGGAAAAATCTTTTATTCATATAAGTGAAAAGGAGATTAAGTGTCAAGTTAATGGTAAACAGCAGCAAAACATTTAATGGACACTTAAAATTTATTACTGTATATGACTGTGTAATAATCCCTTTTGGGGTGTCAGGTGACAAGTTAGGAAAAAGGCAGATTAACAATGAATTTTTTTTTAGAAAATTACTTAAATAGCTAGTTTATTTTTAATTAGATTAGTATGGGTAAAAATAGAAAAAGTATAAAATTTCAATCACCTGTAAAAAGCAATTTCAGTTGATCCAAGTTATGAAATAATTTGAAAATATTTTGATCCTTTATTACTAAACCTGGTCTTTTCAGCCATTATGTTTCTACTGGTAGTCATTACCAAAGATGTCAGGCAGTGGGTACTAAATAACAATCTAAGGCAATGTGATTTTTTTACTCTTGTGATGATTCTTATATTATAGGAAGGCAAAATCGTCTTCACTAAAACGACACTATAAATAAGGCTAGCAACATTCCTCCACATCGTCTTTACAATGATTACCTTATTAAGTATTGGTTTATTTGTAATTAAAAAAGAAAGTGAACAAATTTAGCACTTACATTATGCAGTGTGTTGTGAGCACTTGCCTGTGTATGCCCTGAAATAAGGGCTTTTTTCCTTGACAAAAGGTGTGGGGATACTTAACATTCTTGCAAACTTGCATTTTTACCTCCTCAAATCAAAACTGTTCAGTATATGTGGAGTGACTTCTTTGCCACAAGCAAAACCAAGGGAAAATATAATAATAAATTAACACGGGACAAAGTCTTCAAACTCAACTTACAGCAATGATATAAGGATGCAATCAATGATGCAATGTTAGAAATGTACTAATTAAGAGCTGTAGATTGTATAGGGTGTGTTTTAATTTTTTGGGATCCATTTCTTCAGTTTTTACTATTTATACTTAATGTAAATTAGACTTCATAATTTAAGATGAAATCTTAAATTCATACTATTCATTATTCACAACTTTGCAAAGCATGCTTTATCTTAAACAAAGTATTTCTGCAGGCCATGTAAATTTTTTATGTGAAAAAGAAACTAATAAAAAAAAACTTAAAGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99LW6	YY1-associated factor 2 OS=Mus musculus OX=10090 GN=Yaf2 PE=1 SV=1
Q8IY57	YY1-associated factor 2 OS=Homo sapiens OX=9606 GN=YAF2 PE=1 SV=3
Q8CCI5	RING1 and YY1-binding protein OS=Mus musculus OX=10090 GN=Rybp PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006392 (this species only)
Ubiquitin family	UBD\|ZnF\|NZF · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17219 all species →	YAF2_RYBP	Yaf2/RYBP C-terminal binding motif	Motif	Interproscan
PF00641 all species →	zf-RanBP	Zn-finger in Ran binding protein and others	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036443 all species →	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan
IPR033774 all species →	Conserved_site	Yaf2/RYBP C-terminal binding motif	Interproscan
IPR001876 all species →	Domain	Zinc finger, RanBP2-type	Interproscan
IPR039958 all species →	Family	RING1 and YY1-binding protein/YY1-associated factor 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12920 all species →	RYBP AND YAF2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11468	YAF2; YY1-associated factor 2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.