Gene detail

Detailed information of amic_s0041.g19.t1 in Acropora microphthalma

Genomic Location: sc0000041_pilon:262996...269644
NR annotation: XP_015776386.1, PREDICTED: aquaporin-5-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0041.g19.t1

TGAATTTGATTTGAATTCCAAATATTTTCGATAATCGTTTATCATCAGTATTTTTTTTTTTTTCGGAAACATGCCAGTTTTTGACACGCTCGCGCTGAGAAAGCGCGAATTTTGGTCCGCCGTCGGTGGTGAATTTATCGCCACTACCATTTTTGTATTTATGGTTTGTGCTTCGACTTTAAACTGGGAAAACACCTCTTGTGCACTTCTCCGTATTTCGCTGACTGCTGGGATGACCATTGCGAGCTTAGCTTTGACGATTGGTCACCTGAGTGGCGGTTTAATGAATCCAGCCGTGAACATCGCATTTCTGGTTTCGCGAAGAATTACATTAATTGAAGGAGCTTTCTTCACTGTGGCTCAATTTTGCGGAGGCATTTTAGGTGCAGCTCTTTTATACGGACTTACACCCTCGATGGTGAGAGGAGGACTGGGAGTGACAGCACCAGCACACAATCTTAATAATGCCCAGGCCTTTGGAATTGAGCTGTTACTCACGTTTGTACTGGTTCTGACCATATTTGGCGCGACAGACCGCGACAAGAATCACCACGGATATGAAATACCGTTGTCCATTGGGACATGTGTACTCATCTGTCACATGGTCGGGATTCCATTTACCGGCTGCAGTATGAATCCTGCGCGGTCGTTTGGACCGGCCCTGATTATGAACTCTTGGAAACAACACTGGGTTTACTGGGTTGGCCCTATTCCAGGTGCAATAATGGGTGCGCTGCTCTATGAGCACGTTTTTTCTGCTAGCAAGATGGCTGTGACTCCAGCTTAATCAAGTTTGTTTCGTTAGGAGTAAGTTTACGGCGTTTCTCAAATGGGTTCCGCAAAGAACCACGATCATAAACTTTGTAGAATTTCGAAAATAACGGCCCCCGATACTTCCAGATTGACCAGGTCAGACTGCTGTTACTTTCCATTGGTTTCTTCTCGATTTCGTGTTTTAAATTTGAGATTCAAGAACGTTGGTTTATTCACATCCCATCAAAATTATTATGTTTGTTGCGCTTCCGAGCGAAGACGAAAGCGAAAGCAAACAATTGATTCCAGCTCACAGGTTTGTGCTGTCGATTGGGAGTCCTGTGTTTGAAACGATGTTCCATTGAGCTTCCCCACTGCGAATACGAGAGCCTCTTTGAGTTATTTCGTTACTTATACCCGGATGAAGTGAACTTAATCGGAAGTAATGTAATGGGAGTGCTGCACTTGCAAAATAAGTATATGTTGCCCTGGCTCGTCGACAAATGCACAGAATACCTTCGTCCAATTTTGAATCCATCACAAGTTTTTAAAACCACCTGCTCAATTGCTTGCAGAAAGAGACTTGATTGCTGCCTACTCAGTGAAGGTTATCGATCTAAATGCATTGAAATCAGATCGATTTGCTATAATAGTAAGGTTTTTGCTCGAGGAATTGGTCGAAAGAGATATTCTTCAAATTGAGGAGATCGACCTGTTCAAGGCAGTGATTGAATGGGCGACCAAACGATCGCAAGAACATGCAAGGAAGACAAACCGATGGGCAGCAAATACGAAGGATACTGGGCGAACGGATCATCCAAGCAATATGGTTTCCTCTCATGCAGTTGGATGACTTTATTTCAGTGGTGGGTGACAGTAAAGTCCTGACGAACTAAGAAGTCGCGGCTGCCATTAAATGCATCCATCACCTTGAAGGAAAGGTCAACCATGAAAAGACAATGTGGTCTACAGAAATCCACGAAACGCTCTGTGTGGGATGCTCACGTTTTCCCCTCTTCTGCGTGCTAAGTGGCTAAATGAAAAGTCCCATTTATCGTTTTCTGTGGATCGATGTATAGTTTTACATGGAGTGCATTTGTTGGGTAAAAAAGAAGCGGCCTATGACGTTTGTATTTCAAGTCGTTCATAGGGTGACATCCTTGCAGGAAAAAGGGGGCTTTTATTGGACGAGTCAGAGAAATCTCACGATGTCTTGTTTGAAAGGCCCAAATTTATAATGAGAAACACGATGTACGATAATTCGACATGATTATACCGGCTACACCCAACTGACTGGTTCTGGGACCGAAGAAACTATGCAGTATGGTGGGGTTGCCTTTACCTTCAACCCCTACAAAATGTCAACTACCCTCGAGGGGTAACTTACTGAATTAATTTTCAGTCTTAGGTGTTTGTTTATGTGCAGATTGTCTTTGTCGATTGAATACTGAAATTTTCTTGTTGTAGCTTTGAGTTAgctccatttggggtggggagattaacgaccctggcaatgaggttgTTAATTAGTTCGCATCAACCTTATCCCAAACTGTTACATACTGTGAAGAAGGCTGCGTTAAGCAGACACATTCCTCGTACCACAGGCAGAAGCCCTCATGACTCGAGCGCGTTCGAATTAAACCAGAAGACATTGAATATTCTCTGTCGCTCTTCAATAACTTGAAATACACTGGACAACTATTCAGAATATCTAAAACCCTAGATACCGATGCTTGAATTCAGGTACACATGTAGTATAGCAGGGGAGAATCCAGTGCGGGGGCTGTCAAGTCTTACCTTTTAATAATTTTCTGAGATTTAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P55088	Aquaporin-4 OS=Mus musculus OX=10090 GN=Aqp4 PE=1 SV=2
O77750	Aquaporin-4 OS=Bos taurus OX=9913 GN=AQP4 PE=2 SV=3
P55087	Aquaporin-4 OS=Homo sapiens OX=9606 GN=AQP4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000717 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00230 all species →	MIP	Major intrinsic protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023271 all species →	Homologous_superfamily	Aquaporin-like	Interproscan
IPR000425 all species →	Family	Major intrinsic protein	Interproscan
IPR034294 all species →	Family	Aquaporin transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19139 all species →	AQUAPORIN TRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015267 all species →	Molecular Function	channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006833 all species →	Biological Process	water transport	Interproscan
GO:0015250 all species →	Molecular Function	water channel activity	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0041.g19.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.