Gene detail

Detailed information of amic_s0041.g60.t1 in Acropora microphthalma

Genomic Location: sc0000041_pilon:935233...937606
NR annotation: XP_015773406.1, PREDICTED: protein fem-1 homolog B-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0041.g60.t1

AGGAGCAATATTTTGAAAACAAAAAAGACGAAACTGGTCTATACTTAAATAAATATCAAAATAACTGTACCGTGACAAATGAGTTTACTGAGAATTTCAATTTCCAATTTTGTAAACGTTATGTCCACGCAGTCATCTGTAGCTGATTTTTTAAATAATCGACTGAGTGGAATTTTCAAGTTTCTCACAAAGCTGCCGGAAAGTATGGGTGGAAAACTGTCAAAAACTAAATACACTGATCCTGTGGCTATATTGTACAAAGCTGCACGGGATGGTGCGGATCTTGTAGTCAAAGATGTTCTTCAGCGGATGAGCATCACTGAAAGAAGAACCGCTTTAGAAACGAAAACGAAAGAGGGCGTCCAATTCACCACTCCTTTAATCATCGCCGCTCATAATGGAAAGCTGTTTTCTGTGAAGATGCTTCTAAGATACAAAGCAGACATGGAAGCTCGAGGAACTGTCAAAGTTGACGACGAAGTTGTTGAGGGTTGTACGCCTTTGTGGGCGGCCGCTCACAGTGGACATCTTGATATCGTGAAAATCCTAATCGAACGAAACGCAGACGTCAACGGGAGAACTTCTTCAAACTCGACTCCTTTAAGGGCAGCTGCTTACATCGGACGCCTTGACATTGTAAGTTGTTTGGTTGAGAATGGGGCCGATGTAAATGCACGTAACAATTATGACAATACCCCATTGATGATAGCATGCTACAATGGCCACAGCAAGGTCGTAACCTACCTTATCGAAAGTGGCGCAAACATAGATCTGCAAGACAAGGAAGGCAATACAGCTCTGCACATGGCAATTTACAAGGATCACTTTGAGATTGCTAAAGAATTGGTTGCTCTTGGAGCGCTCCAGTTGCCAAATATTCAACTTTTAACACCACTTCTTTTAGCAAGTAATAAGTGCAAGATTGACATGGTTGAGTATTTCATAAAGAGACCAGAATGTACAAAGGAACAGAGAATTGAGGGGCTTGAGCTTCTTGGTGCCACCATTGCCAATAAAGGTCGTGTTTATGACATCGAGAAAGCATTTTTTTACATGAACCGTGCTATGAAAGAAAGGTTCCAAGACAAATCGTGTCCCCTTCTTAAAAAACAAAGAGAACCTCTTGAAGTTTATCAGTATAGGAAAGAGAGTCAGACTCTTGAAGAACTAGTTCAGTTAGAAGGTGATGATCATGCCATCCACATGGAGGGTCTAATAATCAGGCAGAGAATCCTTGGAGCTGATAACACAGCACTTTGCCTTCCAATAAGATACCGTGGTGCGGTTTTTGCTGACTTAGAGAACTACGATTTTTGCATTGGTTTGTGGAAACATGCCCTCGAAATAGATCAGCGTGCTAACGAGCCAACAACAGAAGCTTTGCAAGACATGGCTGGTTTATTTGGCGAAATGGTTCACAAAGACGTTCTTTTGAGATCAGAGTGTGTGAAAGAGGTGTTTGAAAACCTTGTTTCAGAATATGAGAGACAAACGCAAGAGGAACATAAAGTAAATTTGCACAAAGAGGAACTAGAAAAATTGATTGACTGTGCTCTATATCTAATAATGATATACACCAAAGTCCAAAGTCCAGAAAGCTGTAATGTCAACGCCATGAACACCAAAGGAGACAGTCCTCTTCATTTAGCTGTGACTTTTAAGCCCAGTAACGAAGATCTTCAGCTCTTAAGGGATGTGTTGGAGACATTGTTTGATGGAGGAGTGCACGAGGACCTGGTCAACAGTGAAGGCAAAACAGCTATGGATATTGCTGAAACTGATGATGCACGCAGGATCCTTTCTGTGAGGAGAAGACTGAGGTTGAAATGCATTGCTGCCAGAGCTGTAAGAAAACTTGGATTATGTTACGTTGGGATAGTTCCTGAGACTCTTGAAATATTTATTACCTCACATTAGGCTTGTTTGTTTAGCGAGGAAAACTCACTTTACGAGACTTTGGGAGGCTTGAGAAGACCGATGTTGGCCCTAGGAAAAATCATAAATTGATATCACAACCACTATATTGATATTTGCTAACAGGTTAGGAGGCGTACTCTGTAAGATAAGAGTTAGAGTCGGCCACGGTACCTCACCGATTTGGCTGAAATTTTGCATGTGATCTTGCTTTGAGGACTTAACTACGAAATGGATGTTTTAAAGCTGTGATAAATTTTAGTTTGGGAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GPE5	Protein fem-1 homolog B OS=Xenopus laevis OX=8355 GN=fem1b PE=2 SV=1
Q9Z2G0	Protein fem-1 homolog B OS=Mus musculus OX=10090 GN=Fem1b PE=1 SV=1
Q9UK73	Protein fem-1 homolog B OS=Homo sapiens OX=9606 GN=FEM1B PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000688 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR050842 all species →	Family	Cul2-RING E3 Ligase Substrate-Recognition Fem-1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24173 all species →	ANKYRIN REPEAT CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10349	FEM1B; protein fem-1 homolog B	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.