Gene detail

Detailed information of amic_s0041.g64.t1 in Acropora microphthalma

Genomic Location: sc0000041_pilon:1042737...1066266
NR annotation: XP_029197589.2, protein fem-1 homolog B-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0041.g64.t1

ATGGGTGGAAAACTGTCAAAAAGTGAACACACTGATCCTGTGGCTATATTGTACAAAGCTGCTCGGGATGGTGCGGATGTTGTAGTCAAAGATGTTCTTCAGCGGATGAGCAGCACTGAAAGAAGCAACGCTTTAGAAACGAAGACGGAAGATGGCGATCAATTCACCACTCCCTTAATCATCGCAGCTCGTAATGGAAACCTGGTTTCTGTGAAGATGCTTCTAAGATACAAAGCAGACATGGAAGCTCGAGGAACTGTGAAAATTGAAGACGACGTTATTGGGGGTTGTACACCTTTGTGGGCCGCCGCTGCGAGTGGACATCTTGATATCGTGAAAATCCTAATCGAACGAAACGCAGACGTCAACGCGAGAACTTCTTCAAACTCGACTCCTTTAAGGTCAGCTGCTTACATCGGACGCCTTGACATTGTAAGTTGTTTGGTTGAAAATGGGGCCGATGTAAATGCACGTAACAATTATGACAATACCCCATTGATGGTAGCATGCTACAATGGCCACAGCAAGGTCGTAAGCTACCTTATCGAAACTGGCTCAAACATAGATCTGCAAGAGAAGAAAGGCAATACAGCTCTGCACTGGGCAATTTACAAGGATCACTTTGAGATTGCTAAAGAATTGGTTGCTCTTGGAGCGCTCCAGTTGCCAAATATTCAACTTTTAACACCGCTTCTTTTAGCAAGTAATAATTACAAGATTGACGTGGTTGAGTATTTCATAACGAGACCGGAATGTACAAAGAACCAGAGAATTGAGGGGCTTGAGCTTCTTGGTGCCACTATTGCCAATGAACATGGTGCTTATGACATCGAGAAAGCATTTTCCTACATGAAACGTAGTATGGAAGAAAGATTCCAAGACAAATCGTGTCCCCTTTTAAAAAAGCAAATAGAACCTCTTGAAGTTTATCAGTATAGGAAAGAGAGTCAGACTCTAGAAGAACTAGTTCGGTTAGAAGGTGATGATCATGCCATCCACATGGAGGGTCTTATAATCAGAGAGAGAATTCTTGGAACTGATAATACAGCACTTCGCTTTCCAATACGATACCGTGGTGCGGTTTTAGCTGACTCAGGGAACTTCGATTTTTGCATTGGTTTGTGGAAACATGCCATCGAGATAGGTCAGCGTGCTAACGAGCCAATAACAGAAGATTTGCAACGCATGGCTGAGTTATTTGGCGAAATGGTTCACAAAGACGTGCTTTTGAGATCAGAGTGTGTACAAGGAGTGTTTGCAAAACTTGTTACAGAGTATGAGAGAAAAACGCAAGAGGAACATAAAGTAAATTTGTGTAAAGAGGAACAAGAAAAATTGATTTACTGTGCTCTATATCTATTAATGATATACACCATAATCCAAATTCCAGAAAGTAAGGAGACCGCAGGTATTTTTGACTGTATGCGAAGATTCCTTCGGTTAAACCCTCGCACTCTTGATGGAAATACACTTCTACACTTGGCTTCTTGGTATAAAACAGAAACTACGATGCCGAACTCAAACAAGTTCCTTATATGCAGGCTTCCATGCGTTGAGATCATGAAGCTTATTATGCATGCAGGCTGTAATGTCAACGCCATCAACACAAAAGGAAACAGTCCTCTTCATTTAGCTGTGACTTTTAAGCCGAGTAACGAAGATCTTCAGCTCTTAAGGGATGTGTTGGAGACATTGTTTGATGGAGGAGCACACGAGGACCTGGTCAACAGTGAAAGCAAAACAGCTATGGATATTGCTGAAACTGATGAAGCACGCAGGATCCTTTCTGTGAAGAGGAGACTGAGGTTGAAATGCATTGCTGCCAGAGCTTCAACACCTTGCCATGTTTTACAGATCATGCTGAAGTTAAACGCAACTATGTCTGATAGTGACTATGAGATCTCATCTTCGGCCTCTATTTCAAGCGATGAGCATAGTGATTCATCGGAGGAAATGGAGGTACTTGGACAAGTCCAACCTTACGCGGACGAACCGCCAGCTCACACGAGTGATGAAGAGGAGGACGCTGAAGAAGACCAGGATGGCCTTTCTCCAGCAGTATTAAGGTCTAGATTGGAAAGAGAGGTACCTTTAAACGATTGGTGCAAATGCGAAGAATGCACAGTTTACTATCTTACCGACGCCGTAGAATATAGATGCTGCCGAGAGATCGCTCAGGCAAGCCAAAAACTAATGTTCGACGGAAGCATCGAACGAATTAGCTGCATCACGCAACATGAAGACTATTCTGCCATGACAAACAGAAGTGTTCTTTCACAAGTGGCACCTTTGTTGCGAGACCGAAATGGAAGAGGTTACCGCCGCCGCGATGGACAAACACAAAATCAATTTCTGAGAGCAGTGGCGTACAGATGGCTTGTCCGATGGATGTGTGGATATTTAGGATGGGACAATACGAGACCCCTTCCAGCATGCGTCTATGATGACATCCGCAAAAAATTCCAGTCTACCCAAGTACATGGATACCAGGCTGCAGAACAGCGAAACTAG

Transcript

amic_s0041.g64.t1

CTAGGGGCAATATTTTGACAACAAAAAAGACGAAACTGGTCTATACTTAAACAAATATCGAAGTAACTATCCCGTGACAAATGAGTTTACTGAGAATTTCAATTTTCAATTTTGTAAAGGTTATGTCCACGCAGTCATCTGTAGCTGATTCTTAAATTATCGACTGAGTGCAATTTTCAAGTTTCTCACAAAGCTGCCTTGTAGTATGGGTGGAAAACTGTCAAAAAGTGAACACACTGATCCTGTGGCTATATTGTACAAAGCTGCTCGGGATGGTGCGGATGTTGTAGTCAAAGATGTTCTTCAGCGGATGAGCAGCACTGAAAGAAGCAACGCTTTAGAAACGAAGACGGAAGATGGCGATCAATTCACCACTCCCTTAATCATCGCAGCTCGTAATGGAAACCTGGTTTCTGTGAAGATGCTTCTAAGATACAAAGCAGACATGGAAGCTCGAGGAACTGTGAAAATTGAAGACGACGTTATTGGGGGTTGTACACCTTTGTGGGCCGCCGCTGCGAGTGGACATCTTGATATCGTGAAAATCCTAATCGAACGAAACGCAGACGTCAACGCGAGAACTTCTTCAAACTCGACTCCTTTAAGGTCAGCTGCTTACATCGGACGCCTTGACATTGTAAGTTGTTTGGTTGAAAATGGGGCCGATGTAAATGCACGTAACAATTATGACAATACCCCATTGATGGTAGCATGCTACAATGGCCACAGCAAGGTCGTAAGCTACCTTATCGAAACTGGCTCAAACATAGATCTGCAAGAGAAGAAAGGCAATACAGCTCTGCACTGGGCAATTTACAAGGATCACTTTGAGATTGCTAAAGAATTGGTTGCTCTTGGAGCGCTCCAGTTGCCAAATATTCAACTTTTAACACCGCTTCTTTTAGCAAGTAATAATTACAAGATTGACGTGGTTGAGTATTTCATAACGAGACCGGAATGTACAAAGAACCAGAGAATTGAGGGGCTTGAGCTTCTTGGTGCCACTATTGCCAATGAACATGGTGCTTATGACATCGAGAAAGCATTTTCCTACATGAAACGTAGTATGGAAGAAAGATTCCAAGACAAATCGTGTCCCCTTTTAAAAAAGCAAATAGAACCTCTTGAAGTTTATCAGTATAGGAAAGAGAGTCAGACTCTAGAAGAACTAGTTCGGTTAGAAGGTGATGATCATGCCATCCACATGGAGGGTCTTATAATCAGAGAGAGAATTCTTGGAACTGATAATACAGCACTTCGCTTTCCAATACGATACCGTGGTGCGGTTTTAGCTGACTCAGGGAACTTCGATTTTTGCATTGGTTTGTGGAAACATGCCATCGAGATAGGTCAGCGTGCTAACGAGCCAATAACAGAAGATTTGCAACGCATGGCTGAGTTATTTGGCGAAATGGTTCACAAAGACGTGCTTTTGAGATCAGAGTGTGTACAAGGAGTGTTTGCAAAACTTGTTACAGAGTATGAGAGAAAAACGCAAGAGGAACATAAAGTAAATTTGTGTAAAGAGGAACAAGAAAAATTGATTTACTGTGCTCTATATCTATTAATGATATACACCATAATCCAAATTCCAGAAAGTAAGGAGACCGCAGGTATTTTTGACTGTATGCGAAGATTCCTTCGGTTAAACCCTCGCACTCTTGATGGAAATACACTTCTACACTTGGCTTCTTGGTATAAAACAGAAACTACGATGCCGAACTCAAACAAGTTCCTTATATGCAGGCTTCCATGCGTTGAGATCATGAAGCTTATTATGCATGCAGGCTGTAATGTCAACGCCATCAACACAAAAGGAAACAGTCCTCTTCATTTAGCTGTGACTTTTAAGCCGAGTAACGAAGATCTTCAGCTCTTAAGGGATGTGTTGGAGACATTGTTTGATGGAGGAGCACACGAGGACCTGGTCAACAGTGAAAGCAAAACAGCTATGGATATTGCTGAAACTGATGAAGCACGCAGGATCCTTTCTGTGAAGAGGAGACTGAGGTTGAAATGCATTGCTGCCAGAGCTTCAACACCTTGCCATGTTTTACAGATCATGCTGAAGTTAAACGCAACTATGTCTGATAGTGACTATGAGATCTCATCTTCGGCCTCTATTTCAAGCGATGAGCATAGTGATTCATCGGAGGAAATGGAGGTACTTGGACAAGTCCAACCTTACGCGGACGAACCGCCAGCTCACACGAGTGATGAAGAGGAGGACGCTGAAGAAGACCAGGATGGCCTTTCTCCAGCAGTATTAAGGTCTAGATTGGAAAGAGAGGTACCTTTAAACGATTGGTGCAAATGCGAAGAATGCACAGTTTACTATCTTACCGACGCCGTAGAATATAGATGCTGCCGAGAGATCGCTCAGGCAAGCCAAAAACTAATGTTCGACGGAAGCATCGAACGAATTAGCTGCATCACGCAACATGAAGACTATTCTGCCATGACAAACAGAAGTGTTCTTTCACAAGTGGCACCTTTGTTGCGAGACCGAAATGGAAGAGGTTACCGCCGCCGCGATGGACAAACACAAAATCAATTTCTGAGAGCAGTGGCGTACAGATGGCTTGTCCGATGGATGTGTGGATATTTAGGATGGGACAATACGAGACCCCTTCCAGCATGCGTCTATGATGACATCCGCAAAAAATTCCAGTCTACCCAAGTACATGGATACCAGGCTGCAGAACAGCGAAACTAGCACAACTTATAGCATTAGACAACTGTGCAAAATGTGAAATATATTAATTGGAAATATTGTAATTTTTATCGTCAGTTTTCCTTCTGTAATTTTATATTTGATAAGTCAGTTATTGTTATTTATTTTATTTATATTACAAGTTGAAACTCATGAACTTTTAATAATTCTTGTCATTTTGTGCAAGTATCTTTATCTAACGTGCGTATGAACAATTCATTGCTAAATGTAAAAGAAGAACTTTTAATTTATTATAATTCTAAGAGAAGTGTTGTAAATATAAAAAATGCCTCTTTATCTGCAATGTTCCAAAAAGGAATTACAAATAAATTGGAAATGCTAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GPE5	Protein fem-1 homolog B OS=Xenopus laevis OX=8355 GN=fem1b PE=2 SV=1
Q5ZM55	Protein fem-1 homolog B OS=Gallus gallus OX=9031 GN=FEM1B PE=2 SV=1
P0C6P7	Protein fem-1 homolog B OS=Rattus norvegicus OX=10116 GN=Fem1b PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000688 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF20478 all species →	P2RX7_C	P2X purinoreceptor 7 intracellular domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR046815 all species →	Domain	P2X purinoreceptor 7, intracellular domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24141 all species →	2-5A-DEPENDENT RIBONUCLEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004540 all species →	Molecular Function	RNA nuclease activity	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0041.g64.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.