Gene detail

Detailed information of amic_s0041.g71.t3 in Acropora microphthalma

Genomic Location: sc0000041_pilon:1280329...1313796
NR annotation: XP_015778832.1, PREDICTED: uncharacterized protein LOC107356722 [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0041.g71.t3

ATGGAAAAACTTGTAGAGTCTGCACATTTTGGAAACTCAGAAAAGGAATATATAAAAAAGATGTTTGAGAAGCGCAGCGATGGGGAAGATTTCTTGGGAATTCAAGGATTTTCCTCGTTTATGGAAGAGAATGGGCTTCATACAGACAGGATAAACGACCTTTTTAGATCATTTTGCATTCGCCATCAGAATCAAATGACATACGACGAGCTGCTTGCTGGATTGGCAGCCATGGATCCATACACACCCCATGGGGGGCTCTCAGGGGAGATGCGCTGTCGGTACATCTTCACATTCTACGCCGCTGAGCAGGATGGTGTTCTGTCCTTTGAGGAGTTCAAAAGGAGCTCCGCTGGGCTGAGGGAGGTGGTTGCAGGAATAGTAGCTTTGGAGATTTTTGAAGAATTTGTCAGCCTTTCAGAGGAGTTGCCTAGTAGTCAAGAAGAAGCGCCAGCAAAAGACATTGATGAAAGGCATGTTTCTGCAGACTCCCAAATCAAATCTTCAGGAGACATAAAACGTCAAGAACACATTCAGAAACATCCAAAGCTATGTAAAGCGCCTGGTCAACTACTTGATAAAAAGGCAAAGCCTTTATCAGAGTCACAGCAAGACGATGGAAACTCTTACAAACCAGCTGATAGAGAGAATGACTGTTTGTCATCAGCAATGGGAAAACTTGTAGAGTCTGCACATTTTGGAAACTCAGAAAAGGAATATATAAAAAAGATGTTTGAGAAGCGCAGCGATGGGGAAGATTTCTTGGGAATTCAAGGATTTTCCTCATTTATGGAAGAGAATGGGCTTCATACAGACAGGATAAACGACCTATTTAGATCATTTTGCATTCGCCATCAGAATCAAATGACATACGACGAGCTGCTTGCTGGATTGGCAGCCATGGATCCATACACACCCCATGGGGGGCTCTCAGGGGAGATGCGTTGTCGGTACATCTTCACATTCTACGCCGCTGAGCAGGATGGTGTTCTGTCCTTTGAGGAGTTCAAATCAATGATCAGGGATATAAAGCATCTCAAAGGAGAAAGTACGCAAGATGCTGTTGTGTTAGAAGAAGCGACCAACAAAGTCAAAATTTTTGGCAAAGGAAACAGCACGAATATTCAGTTAGTGGACTTTTTGGAAGCTGTGGGGAGCTTGCGATTTCGCGGGACATCGGTTCTGTTTCGGCTTCCGGTGTCAATCATCCATTTGGTTCAAGAGGAAGTCAGTGCCAGTCTTACTCAACCGGATCAGAGAGCCTGTGTTGCATCTCCAAGCAAGAAGCGGCGGCGAAGTGAAACTGGAGACGAAACGTTAAAATTTGAAGGAGATTTCGTGACTGAATTTGATGTGAAACAGTACGAACTGGCCACTCATACCGTGAAAGTGCGGCGGAGTGGAATGCTCAGCGACGTCAGTGCATTGTGGGATACCAATAATGTCTCCATGGTAACAGGTTGTGCCCAGAGTCACCTCTCTGCTGCTAAACTTAAGATAGAGCGACTTACTTCCATCAACTGTTTCAACCAGCAATCAGATGCCAATCAAATGTTATCAGCCCTGAGGTACTTTGAACGTGCAATCAAGGCTGGTGGTACAAGGACGGGAGATCCTAAGGCCAGTTTTTCGTGGGGCTGTGTTGAGATGCCGTTGCTTGGTAACTGTCTCTTGTGCATTTGTCAGTCCCTTCTCGTGATCATCAAAAAGGAACCCAGGCTAATTAGAGTCAAGTCCCCCATCTATGTTGTTGGTGATCTGCATGGTAATTTCCGTGACTTGGTGTGTTTTGAAAAGGTTTTGTGGCGCATGGGACCTGTTCTCACGCCCGCTAGTTTCATGTTCCTTGGGGACTATGTCGACCGTGGGGAGAATGGAGTTGAGGTCATTGCGTACTTATTTGCACAGAAGTTACTCGCGCCATCCAAGTTTTTCCTCATCCGTGGTAACCATGAAATTAGAGACATCCAGAAAATGTTCACGTTTCATGGTGAATGTGTTCAAAAGTTTGGTGCAGCTCTGGGGGAAGAGGTGTGGAATGTAATCAATGCAGTATTCGATGCTTTACCATTAGCGGCGATAGTGGATGACAAGATCTTTTGTGTTCATGGTGGTATTCCCCTGCCCAGTCAAGGAGGTGGGTTCGTGTCTTCCATTGATAGCATTCCAAGCGATCTCTCTGAACCAGAGACTCAAAGCCAGCTGGCCTGGGAGCTCATGTGGGGTGATCCTTTAAGAAATTTAGACACCAGTCCTGCTTACAACCTTCCACAAAGCGAATACGCATATGTATTTGTGCATTTGCTTGTTGCAGAGTGA

Transcript

amic_s0041.g71.t3

AATTATTTTGAAAAGAAAAAACGACAATAGCTTGCTTCTTTGGAAATGTAAGGGTGAAAGCCTGTGGGGCTTCCCGTATTTTTTCTTTAACGAAACTGAAAGTTTTCGGGCAGGAATTGAAAGATGGTGCAGCATCGAGCTGGGAGTGGGTTCTGTCAGAGATCTAAATCTTCATGTTCATGGTGTTACCAGTGTCAGGCATCATATCAATGACAAAGAAAGAGTTCTAACTCTGGTTTTCTTGTTGTCCTGTCCAAATTTTGAAACTGTTGATGGGGTTGTGAAAGGAAATACAAGGGATTTGCATTTTAAGTGGTTGCTGGGAAATGATGAATTGTGTAAAGAGCCTTTGAAGGAACATGTTAGAAAATGGATCAGTAAAGAAAATCAGGAAGGAATAGTAGCTTTGGAGATTTTTGAAGAATTTGTCAGCCTTTCAGAGGAGTTGCCTAGTAGTCAAGAAGAAGCGCCAGCTAAAGACATTGATGAAAGGCATATTTCTGCAGACTCCCAAATCAAATCTTCAAGAGACATAAAACGTCAAGAACACATTCAGAAACATCCAAAGCTATGTAAAGCCCCAGGTCAACTACTTGATAAAAAGGCAAAGCCTTTATCGGGGTCACAGCAAGACGATGGAGGCTCTGACAAACCAGTTGATGGAGAGAATGACTGTTTGTCATCAGCAATGGAAAAACTTGTAGAGTCTGCACATTTTGGAAACTCAGAAAAGGAATATATAAAAAAGATGTTTGAGAAGCGCAGCGATGGGGAAGATTTCTTGGGAATTCAAGGATTTTCCTCGTTTATGGAAGAGAATGGGCTTCATACAGACAGGATAAACGACCTTTTTAGATCATTTTGCATTCGCCATCAGAATCAAATGACATACGACGAGCTGCTTGCTGGATTGGCAGCCATGGATCCATACACACCCCATGGGGGGCTCTCAGGGGAGATGCGCTGTCGGTACATCTTCACATTCTACGCCGCTGAGCAGGATGGTGTTCTGTCCTTTGAGGAGTTCAAAAGGAGCTCCGCTGGGCTGAGGGAGGTGGTTGCAGGAATAGTAGCTTTGGAGATTTTTGAAGAATTTGTCAGCCTTTCAGAGGAGTTGCCTAGTAGTCAAGAAGAAGCGCCAGCAAAAGACATTGATGAAAGGCATGTTTCTGCAGACTCCCAAATCAAATCTTCAGGAGACATAAAACGTCAAGAACACATTCAGAAACATCCAAAGCTATGTAAAGCGCCTGGTCAACTACTTGATAAAAAGGCAAAGCCTTTATCAGAGTCACAGCAAGACGATGGAAACTCTTACAAACCAGCTGATAGAGAGAATGACTGTTTGTCATCAGCAATGGGAAAACTTGTAGAGTCTGCACATTTTGGAAACTCAGAAAAGGAATATATAAAAAAGATGTTTGAGAAGCGCAGCGATGGGGAAGATTTCTTGGGAATTCAAGGATTTTCCTCATTTATGGAAGAGAATGGGCTTCATACAGACAGGATAAACGACCTATTTAGATCATTTTGCATTCGCCATCAGAATCAAATGACATACGACGAGCTGCTTGCTGGATTGGCAGCCATGGATCCATACACACCCCATGGGGGGCTCTCAGGGGAGATGCGTTGTCGGTACATCTTCACATTCTACGCCGCTGAGCAGGATGGTGTTCTGTCCTTTGAGGAGTTCAAATCAATGATCAGGGATATAAAGCATCTCAAAGGAGAAAGTACGCAAGATGCTGTTGTGTTAGAAGAAGCGACCAACAAAGTCAAAATTTTTGGCAAAGGAAACAGCACGAATATTCAGTTAGTGGACTTTTTGGAAGCTGTGGGGAGCTTGCGATTTCGCGGGACATCGGTTCTGTTTCGGCTTCCGGTGTCAATCATCCATTTGGTTCAAGAGGAAGTCAGTGCCAGTCTTACTCAACCGGATCAGAGAGCCTGTGTTGCATCTCCAAGCAAGAAGCGGCGGCGAAGTGAAACTGGAGACGAAACGTTAAAATTTGAAGGAGATTTCGTGACTGAATTTGATGTGAAACAGTACGAACTGGCCACTCATACCGTGAAAGTGCGGCGGAGTGGAATGCTCAGCGACGTCAGTGCATTGTGGGATACCAATAATGTCTCCATGGTAACAGGTTGTGCCCAGAGTCACCTCTCTGCTGCTAAACTTAAGATAGAGCGACTTACTTCCATCAACTGTTTCAACCAGCAATCAGATGCCAATCAAATGTTATCAGCCCTGAGGTACTTTGAACGTGCAATCAAGGCTGGTGGTACAAGGACGGGAGATCCTAAGGCCAGTTTTTCGTGGGGCTGTGTTGAGATGCCGTTGCTTGGTAACTGTCTCTTGTGCATTTGTCAGTCCCTTCTCGTGATCATCAAAAAGGAACCCAGGCTAATTAGAGTCAAGTCCCCCATCTATGTTGTTGGTGATCTGCATGGTAATTTCCGTGACTTGGTGTGTTTTGAAAAGGTTTTGTGGCGCATGGGACCTGTTCTCACGCCCGCTAGTTTCATGTTCCTTGGGGACTATGTCGACCGTGGGGAGAATGGAGTTGAGGTCATTGCGTACTTATTTGCACAGAAGTTACTCGCGCCATCCAAGTTTTTCCTCATCCGTGGTAACCATGAAATTAGAGACATCCAGAAAATGTTCACGTTTCATGGTGAATGTGTTCAAAAGTTTGGTGCAGCTCTGGGGGAAGAGGTGTGGAATGTAATCAATGCAGTATTCGATGCTTTACCATTAGCGGCGATAGTGGATGACAAGATCTTTTGTGTTCATGGTGGTATTCCCCTGCCCAGTCAAGGAGGTGGGTTCGTGTCTTCCATTGATAGCATTCCAAGCGATCTCTCTGAACCAGAGACTCAAAGCCAGCTGGCCTGGGAGCTCATGTGGGGTGATCCTTTAAGAAATTTAGACACCAGTCCTGCTTACAACCTTCCACAAAGCGAATACGCATATGTATTTGTGCATTTGCTTGTTGCAGAGTGAGTGATAATACCGATATATGTCAAAGACACAATATTCCCAGTTGTCCGTTACTCCAGTTTGACGACTACGCGATCATAAGACGGATTGTTATCTCGGCTACAACATACCTTGTTTGTATATATATTTCCATGCATTGTAGTTCCATGGAAGGCTGCTGATTGTAAGACAAGGTTAACGTTTTCTGCATTTTGAAATTGGCTTAGCCCGATATAGTTCCTTATCCGTGGTAAATTAATTGGCGTTGCGTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P32945	Serine/threonine-protein phosphatase PPQ OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PPQ1 PE=1 SV=1
P48484	Serine/threonine-protein phosphatase PP1 isozyme 4 OS=Arabidopsis thaliana OX=3702 GN=TOPP4 PE=1 SV=1
P23880	Serine/threonine-protein phosphatase PP1-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sds21 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005068 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00149 all species →	Metallophos	Calcineurin-like phosphoesterase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR006186 all species →	Domain	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	Interproscan
IPR050341 all species →	Family	Serine/threonine-protein phosphatase PP1 catalytic subunit	Interproscan
IPR029052 all species →	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR004843 all species →	Domain	Calcineurin-like phosphoesterase domain, ApaH type	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11668 all species →	SERINE/THREONINE PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0004722 all species →	Molecular Function	protein serine/threonine phosphatase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0041.g71.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.