Detailed information of amic_s0041.g73.t1 in Acropora microphthalma

Genomic Location: sc0000041_pilon:1313897...1329553
NR annotation: XP_029203547.2, SMC5-SMC6 complex localization factor protein 1-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6ZQF0DNA topoisomerase 2-binding protein 1 OS=Mus musculus OX=10090 GN=Topbp1 PE=1 SV=2
O04251BRCT domain-containing protein At4g02110 OS=Arabidopsis thaliana OX=3702 GN=At4g02110 PE=4 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003938 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12796
all species →		Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF00533
all species →		BRCTBRCA1 C Terminus (BRCT) domainFamilyInterproscan
PF00023
all species →		AnkAnkyrin repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR049936
all species →		DomainDNA topoisomerase 2-binding protein 1, eighth BRCT domainInterproscan
IPR002110
all species →		RepeatAnkyrin repeatInterproscan
IPR036420
all species →		Homologous_superfamilyBRCT domain superfamilyInterproscan
IPR001357
all species →		DomainBRCT domainInterproscan
IPR036770
all species →		Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR042479
all species →		FamilySMC5-SMC6 complex localization factor protein 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46677
all species →		SMC5-SMC6 COMPLEX LOCALIZATION FACTOR PROTEIN 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006974
all species →		Biological ProcessDNA damage responseInterproscan
GO:0035861
all species →		Cellular Componentsite of double-strand breakInterproscan
GO:1990166
all species →		Biological Processprotein localization to site of double-strand breakInterproscan
GO:2000781
all species →		Biological Processpositive regulation of double-strand break repairInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K26126SLF1; SMC5-SMC6 complex localization factor protein 1-DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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