Gene detail

Detailed information of amic_s0042.g104.t1 in Acropora microphthalma

Genomic Location: sc0000042_pilon:1389018...1396966
NR annotation: XP_029211256.1, LOW QUALITY PROTEIN: frizzled-5-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0042.g104.t1

CGAGCCAACAACAGTACTATTGTGCACTTCTAGAACAAAGACTGATAAACTGAAGAAAAGATTTGATGAAGCGCCATTTCCAAGGAAATGCGTTTTTTCCACTAATGGCTTGGGCTTAAAACTGCCATTGACTGATGTGCGAATTACAAGGCACAATTCACTAATGAGAGGGAATCGAGCCCTGATTGGTTAATGTTTGAATGTGTCAATATTGCTGATCTAATGACAAGAGTGACATACAAGCGACAGAGCCGCGACAAAACACTTAGCTAACGTCCGAATGAGTTCACTTTCGAAATAGCCAGCGTAATGTTAGCAATGACAAATAACAACGCTGTATTAGTTTTGGCTTTGTTTTGTTCGCTGTGCTTCGTTCATGGCCAGGAAAGGAAATGCGAGAAGATCAAGATCCCTATGTGTCAGAACATTGGCTACAATTTAACATACATGCCCAATATGTTTAACCACGATTCTCAAGAGGAAGCAGCGTTAGAAGTTCATCAGTTTTGGCCGTTAGTTGAAATCAAATGCTCGCCAGACTTGAAGTTCTTTCTTTGCTCAATGTATGCGCCAATGTGTCAGCCAAATTTTCAGGAAGAAGTTCCTCCTTGCCGATCAATTTGTGAGCGGGCTAGGAAAGGCTGCGCGCCTTTGATGCAACAGTACGGCTTTTCGTGGCCAGAGCGAATGAAATGTGAAAACTTCCCAATACTTGGAGGCGACCTGATATGTATGGGCCGAAACGATACCAGTGAAAATTCGACAACATCTCCTCTGCCTTCGACGATAACTAGCAGTGGGAATCACGTTGAGACACCGCGGGTTAATTGCTGTTCATGCAGAGCGCCATTTGTTTCGGTCAAAGACAAAAAAGTGACGGCAAGTTTACGGGACGTTTCCACAGGGGGCGTCCCGGGCTGTGTAATGGCTTGCAACAAAACATATTTCTCTGAGGATCAGGAAAGTTTCGCGTCCTTTTGGATTGGGTTATGGGCTGTCTTATGTTTTATCTCTACACTAGTAACATCGCTGACATTTCTAATCGACATGGAACGTTTCAGATATCCGGAGCGACCAATAATCTTTCTGTCGTTCTGCTACTGTTTCGTGGCGATAGGTTACATCATTCGCTTCGTGGCGGGGTACAAAGTCGTTGCTTGTGATTCAGATGGATTAATGAGATACGAGACGTCTGGTCCTGCTGCCTGTACAATCGTTTTCTTGCTGATTTATTTTTTCGGCATGGCTTCATCGCTGTGGTGGGTCATTCTATCCTTTACCTGGTTTTTGTCTGCTGGGATGAAATGGTCGACTGAAGCAATCACCAACTATTCGCAGTACTTTCACGTTGCAGCCTGGCTTATCCCTGCTGTACAGACCATCGCTGTCCTCGCCATGTCCACAGTCGATGGAGATCCAGTGAGCGGAATTTGTTATGTGGGAAATCATAACCTTCGAAGTCTCATTGTGTTTGTAGTGGTACCGCTTCTCGTCTACCTTGTCTTCGGGACTTCCTTCTTGATCGCAGGTTTCTATTCATTGATTCGCATTCGCGAAGTTTTGCGCACGCAGGCAGATAAACTAATCAAAACCGATAAACTTGAAAAGCTTATGATTCGCATCGGAGTATTCTCCGTTTTATACACTGTGCCGGCGACAATAGTAGTGGCTTGTTACTTTTATGAATTTGTGAACAGAGAACATTGGGAGCGATCTATCGTTTGCGCGGAGTGTGTGAGTAAATATGAGGTCCAACCCGATCACTCTGTTTTTATTATCAAGTATTTTATGGCACTGGTGGTCGGCATAACTTCTGGATTTTGGATTTGGTCGGGAAAGACCATCGAATCATGGAAGAAATTCTGCCATCGTATATTTGGCGCGCGTAGAGGGAAAAGAGACATGGCAGCCAAATCTTTGACGGCTCAGGCCACTGTTTAAATAAACTCGCAGGGTATTTGTTTTGTCAAAGATATTTAATTCCTTCCAGCCCACTCGCTCGCTTGAGAGAGCATCAGGCAATAAAGCCCTTGTCGATGCACAATATCGAATCATTGGCCCTGTGAAGTGTAAAATATTTCAAACATTCGCAACACATCGAGGAAAGTTGACAAACTCACAGACACATGGCATCTATCTCTTTCGGATTTCGTGGAACTGTATAAAATACAATTATTGACTTAAAAAATCAACCACGCTGAGCTGTGACAATGTTTTAAACATTCATGAATTCGGCACAAAATTTGCATAGGCTAATGAATTAGTTTTTTCAACAAGTCTTTTCTGTTCTTGACGCTTCGTTAATCACAGTTCACTGTATGTAAACGTGAAACTTGTTTACAATAATTATGGGTCGTAATTTGAGTATGCCGGCTTCCCTGAAGACCTCAGCATTTTTTGGCGAAAAAAGCTAACTTGGAGGCCAGTGTAAGCCAGATTCTTCCCTAATAGACAGTGGATATAAGCCGTCTTTTGAATAGACTAATTATCCTACTAATTATAGGTCCCAAGAGAGTGGTCTTCCCAGAGACAATTAGTGGCATATCATTCAACAATACAAGCTTTAGCACTAGCAGAACTCTTCTACGTCGAAAAACATATTATTTTTACGATCTATTAACACAAACGAGCCACTAAAACTATCTATGTTTATGCATGGATTTAATTTAAGATAATTTACATTCCAGTCAACATTAAACTAGGAATATTTTTTGTACATCAGGAGCAATGGTGATCCGTTGTTATAAAGGAGGGTACTCAAAGTAATTTCGAGTTCTTGGTTAAGATGTTATTTTGTTTGATAATGGCAACGTTTGACGGAAAGGTAACGCTGGAATCTGAGCATAAAATCGATTATTGAAAACGTATCCTGCTGGTTCATCTTTTCTTTCACACATGACAAAACACTAAACGGACTAAGAAAACAAAAGATTGAATTGCGTTGGAAAGGCCAACCCTCCAATTAGCAGCTCAGCCCCACTCTTCAAATATAGCAAGCCCTCAATCATTGTGTTGTACTCTTGTCCATAATGACGACTGCTCGCAATAGCCGCAAGTCAGTGTAATCTAGTTCTACGTTCACTGCTTCGTCTATCCTGAGACTTGTTTACAAAGGGTTGGTGTTGTTGTTCCTCGGGACAATGTATTGAAGCTTGCAAATCCGTAGTGACAGTTTTCGAAATAAGTCGTACAAAATTATTTGCCCTTCACAAAACGATATTGTCACTGACACATGTACTTTTGAAAGGTCTTGGATATTTGATTTTCACATGGAAAAATTCTCGCGTTTAGAATAAGATTCGCGGTAGTCTACGCCATCTGTCGCTTGATATGCAAAGAAACCTTTATGAGCAAAGGAAGGAGAGAAATTTGCATCTCAATACACGAAAATCCGACGTGTATGATGCCATACTAAATAACCGCAAATTTGACAAACCTCTTGACTGTCAAAAACACAGCAGCTGGACAACTTATAATTTACTTACGTTTCGTCTTTCTCTTGTTTTATGGAAGACGACTCAGATACAGCGATGATGACCACACTGCAAACAGTCCTCTAAATATACAACAACTAAAATGCACCTGAGGCCCATAGGGAGGGAAAAAGAGAGGCCCTGGGGACGAGGTTGTTTAGTCAGTTCCACGGATGGATATGCGAAACGCAGAAACCTTAGCGAGTTTCGATTTACTCATTTTAGTCTCGTCTTTCTTGCTTCCTTGTAAGTTGCGTTTCTGTACACAATAGTCATTATTGTTGTTCATTGATACACTGTAGTTTGTTTTCAACTAAAATTCGTAGGCCTTTTCCTTTGTTGGTGTTTTTTGATTGCGGCCCACTTACAATTTAGCAATCCATGCCCTGTTGCTCAGCTAACAGGAGACATTATTTTAAATGCCATGACGTTATCTTCCAATCTTCCTTCTGAGATGTAATCGAGTTATATTCTGCATTTGGCGAAAGTTACACTCCCTGGCGAGTAGTTGAATTTTAAAGCGAAGAAAGACGTGTTAACTCACGCTCTATTTTTTTGCGCGGCCGCGCAACCATAACATGGAAAATACAGGGCTCTTACAAGATTAGCAGCTGTCTTTCACCCCTTTCCGTTTCTTGAAAAATCATTCACCATCTTTCCTGAAGCCTGCGAATGACATTCCACGAAACTTCTGGCCGGCTCGGCTTTTCATGATATTGATACCGTAAACTGCCACGGTGGGTCGACGGCCTTCGTGTCAGCGATTTTTAAACTGTAATGACGGTTTTATCCTCCCAAAATATCCCTGCCAGGTAGCTGTTTGGATTTGGCCTAGGACGCAAAGGAGACGAGAGCAGAGAGGATTTGTTCATCACAAAGCAATCAGTGCTGTTTGTACTCCAAGCTTATGAGCTCGCTATGCACGTACTGTCTTTCTCTGCTGTGCTTCAGTTTCAAGCCGATTGTCTGAACACTCTTCATAGCATAGCAAGAAGCAAGATAGATATGTACACCAACGTGACTTAGCCAGTATCTTGCCCATGTTGCACGTGGTGTTCTTGCCTCTACCAAGTCAGGCCTCATCAGTGTCGATCAGTCGTCGAAGTACACATGTCCAACAAAACCATGTTAGAACTGATTTTGGTTCTGGCCAAAGCACGAGGTTGTTGTTCGTGTGGGTCCACCTTTTGTGCTTTGCATTCTGTTTCTTTACGTGACCTATCCATAAATCTTTTCGTAAAAACTTATGTTTTTTTAGCTGACCTAGATTGAAATCATGGAAGGTCATCGAAGTTAATGTACAATACACACTAAGCCGTGTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P58421	Frizzled-5 OS=Xenopus laevis OX=8355 GN=fzd5 PE=2 SV=1
B3DIG4	Frizzled-5 OS=Danio rerio OX=7955 GN=fzd5 PE=2 SV=1
O93274	Frizzled-8 OS=Xenopus laevis OX=8355 GN=fzd8 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000345 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01534 all species →	Frizzled	Frizzled/Smoothened family membrane region	Family	Interproscan
PF01392 all species →	Fz	Fz domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000539 all species →	Domain	Frizzled/Smoothened, 7TM	Interproscan
IPR020067 all species →	Domain	Frizzled domain	Interproscan
IPR015526 all species →	Family	Frizzled/secreted frizzled-related protein	Interproscan
IPR036790 all species →	Homologous_superfamily	Frizzled cysteine-rich domain superfamily	Interproscan
IPR017981 all species →	Domain	GPCR, family 2-like, 7TM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11309 all species →	FRIZZLED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0017147 all species →	Molecular Function	Wnt-protein binding	Interproscan
GO:0035567 all species →	Biological Process	non-canonical Wnt signaling pathway	Interproscan
GO:0042813 all species →	Molecular Function	Wnt receptor activity	Interproscan
GO:0060070 all species →	Biological Process	canonical Wnt signaling pathway	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0042.g104.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.