Genomic Location: sc0000042_pilon:663625...673456
NR annotation: XP_044183181.1, origin recognition complex subunit 3-like isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families
| CDS |
| amic_s0042.g42.t1 |
| Transcript |
| amic_s0042.g42.t1 |
| Protein |
| amic_s0042.g42.t1 |
| UniProt accession | Description |
|---|---|
| Q9UBD5 | Origin recognition complex subunit 3 OS=Homo sapiens OX=9606 GN=ORC3 PE=1 SV=1 |
| Q32PJ3 | Origin recognition complex subunit 3 OS=Bos taurus OX=9913 GN=ORC3 PE=2 SV=1 |
| Q5DJU3 | Origin recognition complex subunit 3 OS=Spermophilus citellus OX=9997 GN=ORC3 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003791 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07034 all species → | ORC3_N | Origin recognition complex (ORC) subunit 3 N-terminus | Domain | Interproscan |
| PF19675 all species → | ORC3_ins | Origin recognition complex subunit 3 insertion domain | Family | Interproscan |
| PF18137 all species → | ORC_WH_C | Origin recognition complex winged helix C-terminal | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR045667 all species → | Domain | Origin recognition complex subunit 3, N-terminal | Interproscan |
| IPR045663 all species → | Domain | Origin recognition complex subunit 3, insertion domain | Interproscan |
| IPR020795 all species → | Family | Origin recognition complex, subunit 3 | Interproscan |
| IPR040855 all species → | Domain | Origin recognition complex subunit 3, winged helix C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12748 all species → | ORIGIN RECOGNITION COMPLEX SUBUNIT 3 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0003688 all species → | Molecular Function | DNA replication origin binding | Interproscan |
| GO:0005656 all species → | Cellular Component | nuclear pre-replicative complex | Interproscan |
| GO:0005664 all species → | Cellular Component | nuclear origin of replication recognition complex | Interproscan |
| GO:0006260 all species → | Biological Process | DNA replication | Interproscan |
| GO:0006270 all species → | Biological Process | DNA replication initiation | Interproscan |
| GO:0031261 all species → | Cellular Component | DNA replication preinitiation complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02605 | ORC3; origin recognition complex subunit 3 | - | Chromosome and associated proteins | ko03036 | deepkoala |
Genes whose expression across the transcriptome samples of Acropora microphthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Acropora microphthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |