Gene detail

Detailed information of amic_s0042.g73.t1 in Acropora microphthalma

Genomic Location: sc0000042_pilon:971687...983050
NR annotation: XP_029211360.2, la-related protein 7-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0042.g73.t1

AGTACTGGAGCGATCAACAAAGTTGCCTGGCCTGCAATGGTGGACTTCTCAAAGGTACGTAAGTTATAAAGCTGTAATAACTTTGTTTTGCTTCCCACACGTCGTGTGAGATTCTCTTTTCACACTTGTTTCAGGAAGTTCAACGGATCCAAGACTAAACAATACCAATAGAAGAAGACAATGAATACTCAAGATATTGAAGAGGAAAAAATGCAAAAGAAACGCAAGAAAAGAACAAAGAAAATCTTGACACAACTTAAGGAACAGATTGAGTTTTATTTTGGTGATGCAAATCTTTCCAAAGACCGTTTTATGAAACAAGAAATCACCAAGCATCCTGAAGGGCATGTTTTAATTTCAATCATTGCTAGCTTTAACCGCATCAAGCAGACCACTGATGATGTTAAACTTGTTGTCAAGGCCATGAAGATGTCTTCTTTGCTTGAGGTCAGTGAAGATGAGACAATGGTGAGACGGAAAACACCTATTCCGGAACCAAGAAATACAGATGCAGAAACAATCTATGTCGAGAGACTTCCTCCATATGCTGATCATGAATGGTTGAAGGCAATTTTCAGCAAGTATGGAAAAGTTGTTTATGTCAGCATACCAAGGTTCAAACACAACGGAGATATCAAAGGATTTGCTTTTGTAGAATTTGAAAATGCAAACAATGCTCAAGAGGCAGTGCAGGTTTTCAACAAAGGAGGGAAATACAGGCAAGATAATGAACCTGAAGTGAAAACTGAAAATGGGGACAGCACTGATCAGGTGAATGAACAACCAAAGATAACAAAGGCAAAAAGAAAGAGGTCACATAGTGAATCGGAATTGGATACACAGAGACACAAGGAAAGCAAGAGAAGAAAGACAATCAGTGAATCATCTGCTGACTCGGATAAGGAAGGACATGGTGATTCAAAAGGCTTGAAGAAAAGGGACATTAGTAAGTCAATTGAAGATTGTCAGGGAGGGGTGGTCGGGGATGCTGACAGCAAAAACAGGAAGGAAAGAAAGAGTGTCCAGTGGGGGAAAGGTGAAGAAGCAACACTACTGGACAGAGGAAATACCAGTGTTTTGTCAACAGTGGGACAGAAAGGCAGGCATGATGAACCCATGAGCAATGAGGACAAGATTGAGCAAAAGCAACAAGGGATGAGTGGAAAGGAAAGTGCAGAGGAAAGTTTCGAGGATGAAGCTagaaatgaaagtaaaaaacaaaagaaaagaaaacgaaaaaagaaagagaagaaggaaaCCAGGTTGCCTCACTTGAGAGTTATTTCCAAGTTTGAGTGGCAACGTCTCAAGAAGGAGTATAAGGATATGCAGCGTGAAGCAATGAAAAAATTGAAGGAACAATTATCACAATCTAAACCTTCTGCTGATGACACTCAACGTGAAAACCAACAGACAACACAAGCAaaagatttagataacgaagcgttaaagataaagaATGGAAGTAAAATCCCTAAAGAATCTAAGGAGCAAGTCTCAGAAGTGAAAAAGCTGCCTTATACACCTGGAGTTGTCTTGAAATTTCTGTGTCAAAATGGTGAAACAAACAAAGCAGAACTAAGGGCTCTCTTCTCGTCATATTCACCTGTAGCTTATCTGGATTTCACCGAAGGGGGTTCTGAGGGCCATGTTCGCTTCCACACTGGCGACAGCTGTGATTCTGTTTTGAAGGCGATGTTGTCAAAAAGCGATAAAGTCAAAGTTGAAAAACTTACAGGAGAGACGGAGAAGGTGTATTGGGAGAAGATTAACGCCGATCGCATGGCGAGATACAATGCAAAGAGAGAAAAGAAAAGGGGATCTGATAAGGTTGCAAGGAAAGCTGATGCGTTACAAATGCAACGCCAAATTCATATTCGATTTGATGAAGAAGAAACCTGAAATTAACAGTGTGGTACACGTGCGGTAAGAATGGATGACCTGTTCTGTACATGGGAGGGGTGACAGGTAAAATTCCAAGGGCTTTCCACGGCAGAAAACCGAAACACTAGATTTTAGCCCCAAATGCATGGCGATGAGGTCTGGCGCTAAAACTAAAACGACGGGCATTTCGATGCCCGCAAAATATCTGCAGGCAGATAAATAGGTAGATAGGTTTGGAGATATTTAGTGCAGAGAAACCACATTTGTTGTACATGCATTGTAAGGCAAGTGAAAAAGTGTCAAGCCGTGTCCCATGTTACATCTGGGCTGATTACGGTATTTTGAAGTAGTATTGGAGGAAAGACAATACCAGAAAACAAAGTCTGGCGATCCTGTTGATTTATTTATTATTTTTACATTTGTGAATATTCGGTCATGGAGTCTCCGTGCAGAAATAGCGCCCAATAATTTTTTGGCCTAGTACCAACTGTTCCCTCTTACGCTGTTAAGCTTAAAGAATGACGAAATTTTGTTTTGACCTCGAGGCTTGTTGTGCAAAGACATATGAAAAATATTCAGTGAGAGTCATTGTTGGCGTCACGCTTATCTTGTCTTAGAGTCGCGTGACCAGTGTAGGAGCAGGAAATGCGTATCTCAACGATTACACGTAGTCTCTTGTCCCGACACGTGATCTTTCCTCTCCACTGAAAAGATTGCGTGTCGAACCAAAAATTGTCTTCATAGGAGGCTAAAGAGAAAGCAACTTACGAACATCTCGTAGTCAGACATTTTATTCAATTGGCTCAATCTGATTTTTACCAATGCAAAAGTTGTGCAGAGAAGAAGATCATACAAACGCTAAGTTACGGAGAGTTTTCGTTACGCCTTAGAGTAGCAGCAACATGTTTTTAAGTTTCTTATGTAATTCTCTCTTTTTAATAGAATCATTATACAGTC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005516 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08777 all species →	RRM_3	RNA binding motif	Domain	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034887 all species →	Domain	LARP7, RNA recognition motif 1	Interproscan
IPR014886 all species →	Domain	La protein, xRRM domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15481 all species →	RIBONUCLEIC ACID BINDING PROTEIN S1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0061574 all species →	Cellular Component	ASAP complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0042.g73.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.