Gene detail

Detailed information of amic_s0043.g27.t1 in Acropora microphthalma

Genomic Location: sc0000043_pilon:291096...298545
NR annotation: XP_015759751.1, PREDICTED: tropomodulin-3-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0043.g27.t1

AAGAAACACAAGACGCCCAAATAGCTGTGTAGTGCTTAGTGGGTTTTCGTCGTACTTCGTCCCTTAGAACGCAAATTATAGCCTTTGTTGGCTTTGTAAGTGCTATTCTGACAAGAGGAAGGAATTTCTTCGATAGTGAAGGCATTTTCCAGGGGAAGAGCGTTGAGGATTTGTATTGCTTGTCTCCGTGATGTCTTGGCTACAGCAAAAGAAAGGTCGAGTTGATCTCGATGAATTCAAGGATATCGATGAAGATGTCTTAGTGGAAACTCTTTCTCCTGAAGAAATAGCCGATTTGAACGCAGCTATTGATCCTGAGAATGCATTGTTACCAGTCAATGAACGTCAAGCCAATCAGACAAACAAGGCTAGCACTGGACCTTTCGACAGACAACATCTTCTGGATCACTTGGAAGAACAGGCCAAGAATGATAAGGAGCGAGATGATTATGTGCCATACAAAAAGGAAACTCGCGGCAAGGTTTGGCGACCGAAAGAGAAGTCTGCAAAGAAAGAACCGGAACCTATGCTTCCAGACGATCTCAGTGAAGTACTCGATAATGCTACTGAGGAAGAGATGCTGGAACTTGCAGCCATTCTTGGAGTTCACAGCATGCTTACGCAAAGTCAAAGTAACTGGGCAGAAAAGCCAGATGCTGGAAAGGCACTCAGAGGTAGTGGCCTCAAGAAATACAAGCCTGGTCTTGTGAAAGCAACCAAGATAAAGAAGCCAGACCTTACTGCAGTGAATGAGTTGAATGTGAGCAAAGCCATGGATCAGCTGAAGAACAATGATCCAAAACTCACATCATTGAACTTAAATAATCATCCAGAAGCTACTGCCAAGGTGCTTCAAGATATAGCGGAAGCCTTACTTACAAACACTAACCTGAAACATGTTCATCTTGCAAACACTCAGATGACAGACAGGATAGCCAAGCTGTTTGCTGACGTTCTGAATAAAAACAAGACCCTCGAGACATTAAATCTGGAGTCTAACTTCTTAACTGGTGTAGGAATCATGGAGGTAATGGAAGCCTTGGAAACCAACACCACTTTGCAAGCACTTCGCTTATCTAATCAGTGTTCTGTAATCGGCAGTCAAGTGGAACAGAAAATGGTAAACTCCTTACAAAAGAACAAAACTTTGTTGAATTTTGGAATGAGCTTCGACACCCAAGGACCAAGGATCAGGGCAGCTGAGCTCATGCTGCGAAACAATGATTCAATTCGGCAGGAGCGTGTCGAGAACGATGTTAatgaagatgaggaggaggaagatgatgatgaggaagaagaagaagatgatggtgaagattaacatggagTATCAGTTTCTCTGTCTTGAAGCCATTCGGTTTGAACAACGAATCTCCTCAGTCTTATCAAATAAATGTCCATAGAAATTTTCCTAAACAACCACACCTTCCTGGCGTGCATATAGAAAGTATTTCCTGAAAATTCTGTTTCTTGTGGCTCTCAGGGTGTCATTACTGTGGTCTTTGACCGTATCTGTGATGTGCCGGAGATTTGATCTCGGGAAGTGCGTTAACTTTTAGATAGTCTTTGAATTTATTTCTCCAATTAAACCCATTGTATTGTTCTCTTTTGGATTGATTTAGAAGTTACGTTATGCGTGAATCAGACTGCAATATTTAGTCATTGGAGAAGAAAACAAGATTGTTTTTGAAATGTCGAAGATATTTCACAAACGTCCTTTAAGATGATTTTCTTCGTTTCCAGGTGACGAATGACAATATTGACAATAATTTCTGAAGAACGATTATATCCTTTTGCGATTCTTCAAGCGAAACGAAAAGCTGAGATGCTAAAATTTGTGTTTCTTAGTCATCTTCCGAAACTAAAACTCAAATTGTCCTTCGTTAAATGTCCTTGTCTTTCAGTATTTTGCACTTTGAAAACAATTTTTATCATTCATATTTCAAGTGTCAAGGAAAGGTAATCATAAGGGTCTGTTAATAACTATATGATATTTATGTTTAGCTTTGTAGGTCTGTGGTTACAGTTTTTTTTAAATAACAGTGGAATTATTAACAGCTTCTTATTGGCAAAACTTTACATTTCTTTACACCTTTGCCCTCACGTGCGTATATGCGAATCACGTACTTTTTTTTTCAACAAAGGTTGTTTACCACGAGTAATAATTCCAATTGATTCCAGTAAATCAAATTGAAATAGGCGACTTATGGTGAACAGGGTTACAATTTGTGAGCGAATTCAAAGTGATCATGGCACTTGTTTGCAGTAGTTTTAGATTTAAACAATCAAGGCGTAAAACTCGGTGACAAGTGACTTTGTGTAGTAACGAGAAATCGGATGGGATGAGATACAACTTGAAATAAAGACTTAACTAATTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P49813	Tropomodulin-1 OS=Mus musculus OX=10090 GN=Tmod1 PE=1 SV=2
Q9NYL9	Tropomodulin-3 OS=Homo sapiens OX=9606 GN=TMOD3 PE=1 SV=1
A0JNC0	Tropomodulin-1 OS=Bos taurus OX=9913 GN=TMOD1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002197 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF03250 all species →	Tropomodulin	Tropomodulin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR004934 all species →	Family	Tropomodulin	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10901 all species →	TROPOMODULIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005523 all species →	Molecular Function	tropomyosin binding	Interproscan
GO:0051694 all species →	Biological Process	pointed-end actin filament capping	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10370	TMOD; tropomodulin	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.