Gene detail

Detailed information of amic_s0043.g66.t1 in Acropora microphthalma

Genomic Location: sc0000043_pilon:1013498...1025086
NR annotation: XP_029192079.2, uncharacterized protein LOC114958466 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0043.g66.t1

ATGGCTTTTAGCCTCAAGTCGGTCCTTCAACAAAGATCTTTTGATTTAAGCGACGCAGTGGAGGAAACATCGAAACCTGTATTCCAGCGCCTTGCTTGTGGACTGGGCCACACACTCAACGACCTCACCACCCAACTCCTCTTCTCGTTCCGTCTTGTTCTCTTTATGAATGTTCTTGGTCTCTCTGCAGAAAATGCTGGTTGGCTGGTTCTTCAAAAACAATTGGTACACGTTGTCATGGCGCCCGTTTGTGCCATGTTAGTGGACAGAGTCTACATTCCATTGCTGTCCAGAAAATATGGAAGGAAAAAGTCTTGGCATTTGATTGGGACGTTTTTGCAAACGGTCTTTATCCCCCTTTTTTTCGCTGCTCACTACCTCATTCAAAATGATAATGGCCAGACCGAGCAGATGATGTTGATATACTTTGGAATATTGCATGTTATTTTGGGTTTCGGTGACAGCATGTTGGATATTTCCCATTTGTCTCTGATTTCAGTGGTTGCTAAAGATCAAATTGAGGCAGTGGAATTGAGCGCACTAAGGACTGCTTTTACCTACTTGAGTGGTATCTTAACCTTTGTTGTATCTTGGGTAATACTTGGTCAAGGTTCTAAGAGTCAACTTTCTGCAAACAGTTCCAAGGACTTCACGGTGTTGACTGCAATTTTGGTAGCAGTAGGAGTTCTACTTTCCCTGATATTCCATGTGGGAACCAAGGAGCCTAGTTCCAGTCCCCGCATGCCCTTAAGGAAATTGTCTACTCTCGCTGCAACAAATTTGGCGAGGCTGACATCTTTCAGTCCGTCTGGTGGTCTTGGAGAGCCAATGCCAAGTCTTGCAACAGGATTAATTGTTGTCAGGAAGTTGAGTCGTCCTTCACGGAAAGCATCTCGTACGCGCGTTAGTTTCGGCGATGGGATGCGATGGACGCCAAGAAAATGTGATGAGAGCGAAGAGAAAATGGCACCAAAGGAGATGCCCAAGAGTTCATCGCTATCGCCTGATCCTAACTCCATTGGCGTGTTCAATAAAGGGTTTTATGTCAGTGTACTTGATCTGTACTCCGATGATGAGTCAAATGATACAAGCCACGTTGTCAAAGAACCTGTACCAATCACTAAAGTTACGGATGTTTCAGTGGAAAATGAGAGTGCCCTTTTATCCAAGACTGAAACAATCAATCAGCCTAGCATTAACTCAGGATCAAATACTTCCAGGAAGGACAGTGTTCCTTCAAAGAAAACTTCTCGTGTTACTTTCTCTGATGAGATCTTATTATCGAAAAAATTCGCTACGAATGAAACGCAAACACTAAAGGAGGTGGAAATTCCAAAAGAAAATCCTCAGTCTTGGAGTTCATCGTTATCAAACGATTCTAACTCAACTGGCGTTGTCAATAAAGAACTTTCTGTAAGTGTACTGGATCTGCCTTCAGATGATGAATCAAGTGGCACAGGCCGCGTTAGCGAAGAACCTGTACCTATCATCAAGTTATCAGCGGTTTCACTGGAAACTGAGTGCGCGCAGTTAAACAACAGCCGGGCAAACGGATTAAATACTACTACGAATAAGAGTTGCCCTTCACGGAAGAAGGCTTGTGGTCGTTTCTGCGGTGGTATTCAACCAACGTCAGCAAAATATAACCCGAACGATGAGCAAACGTTGTTTAACGAGACGGAACCTTCAAAAGACTATCTCCAGCCTTGGAGTTCATCGTTATCAGACGATCCAAACTGCACTGAAGATGTGATCAATAGGAATCTCCCTGTTCGTGTATTGGACGTGTATTCAGATGATAGATCAGATGACACAAGCCGCGTTTGTAAAGAACAAGCAGCCATCAACATATCATCTGTCTCACCGGAGATAACAAGTGATTCATTATCGGAGTCCAATGCAAACAGTAAGCCTGTTGTTGACTCAGGTGGCCCTGAGGTTCTTCCTCCACGCTTGATCAGTGAAAAGACTGTGCGAGACTGGGTTTTCGACCCTCGTCTGTATATAGTTGCCATCGCTTACTCTTGTTCATGGACGTTACAATCACATGGCTATTCGTACTTGCCTCTCCTTCTTATTTACAGACTTCGTCTCAGTAAGGACTCTATCGCTTATCTCCCGCTTATTATGTCGATAAGCGCTGCAGTATCCTCTTTGCTCTCCAAGAAGTTTGTTCAGAAAATCGGAAACAAGCTGTGTTTCATCTTTGCTGCTATTTCTGTTTCTTCCTCCGGAGTAATGACTTACTTCATGGAACCTGAATCCAGTGAAAAATTGATCTACCCTGCTGTTATATTACTTGGATTTGGTTTTTCCTTGATGCATGTTAATTCCCTAAACTTCGGAACGGAACTCATTGGGGACAATAAGAAAACGAGTGGTTTTAGGAAAGGGGCACAGACTGTATAG

Transcript

amic_s0043.g66.t1

CGTTTCCTTCCGTAATTGAAAAGGACTCATTTTTTACTTGATCAATTTAGCTATCGCTCCTAATGGCTTTTAGCCTCAAGTCGGTCCTTCAACAAAGATCTTTTGATTTAAGCGACGCAGTGGAGGAAACATCGAAACCTGTATTCCAGCGCCTTGCTTGTGGACTGGGCCACACACTCAACGACCTCACCACCCAACTCCTCTTCTCGTTCCGTCTTGTTCTCTTTATGAATGTTCTTGGTCTCTCTGCAGAAAATGCTGGTTGGCTGGTTCTTCAAAAACAATTGGTACACGTTGTCATGGCGCCCGTTTGTGCCATGTTAGTGGACAGAGTCTACATTCCATTGCTGTCCAGAAAATATGGAAGGAAAAAGTCTTGGCATTTGATTGGGACGTTTTTGCAAACGGTCTTTATCCCCCTTTTTTTCGCTGCTCACTACCTCATTCAAAATGATAATGGCCAGACCGAGCAGATGATGTTGATATACTTTGGAATATTGCATGTTATTTTGGGTTTCGGTGACAGCATGTTGGATATTTCCCATTTGTCTCTGATTTCAGTGGTTGCTAAAGATCAAATTGAGGCAGTGGAATTGAGCGCACTAAGGACTGCTTTTACCTACTTGAGTGGTATCTTAACCTTTGTTGTATCTTGGGTAATACTTGGTCAAGGTTCTAAGAGTCAACTTTCTGCAAACAGTTCCAAGGACTTCACGGTGTTGACTGCAATTTTGGTAGCAGTAGGAGTTCTACTTTCCCTGATATTCCATGTGGGAACCAAGGAGCCTAGTTCCAGTCCCCGCATGCCCTTAAGGAAATTGTCTACTCTCGCTGCAACAAATTTGGCGAGGCTGACATCTTTCAGTCCGTCTGGTGGTCTTGGAGAGCCAATGCCAAGTCTTGCAACAGGATTAATTGTTGTCAGGAAGTTGAGTCGTCCTTCACGGAAAGCATCTCGTACGCGCGTTAGTTTCGGCGATGGGATGCGATGGACGCCAAGAAAATGTGATGAGAGCGAAGAGAAAATGGCACCAAAGGAGATGCCCAAGAGTTCATCGCTATCGCCTGATCCTAACTCCATTGGCGTGTTCAATAAAGGGTTTTATGTCAGTGTACTTGATCTGTACTCCGATGATGAGTCAAATGATACAAGCCACGTTGTCAAAGAACCTGTACCAATCACTAAAGTTACGGATGTTTCAGTGGAAAATGAGAGTGCCCTTTTATCCAAGACTGAAACAATCAATCAGCCTAGCATTAACTCAGGATCAAATACTTCCAGGAAGGACAGTGTTCCTTCAAAGAAAACTTCTCGTGTTACTTTCTCTGATGAGATCTTATTATCGAAAAAATTCGCTACGAATGAAACGCAAACACTAAAGGAGGTGGAAATTCCAAAAGAAAATCCTCAGTCTTGGAGTTCATCGTTATCAAACGATTCTAACTCAACTGGCGTTGTCAATAAAGAACTTTCTGTAAGTGTACTGGATCTGCCTTCAGATGATGAATCAAGTGGCACAGGCCGCGTTAGCGAAGAACCTGTACCTATCATCAAGTTATCAGCGGTTTCACTGGAAACTGAGTGCGCGCAGTTAAACAACAGCCGGGCAAACGGATTAAATACTACTACGAATAAGAGTTGCCCTTCACGGAAGAAGGCTTGTGGTCGTTTCTGCGGTGGTATTCAACCAACGTCAGCAAAATATAACCCGAACGATGAGCAAACGTTGTTTAACGAGACGGAACCTTCAAAAGACTATCTCCAGCCTTGGAGTTCATCGTTATCAGACGATCCAAACTGCACTGAAGATGTGATCAATAGGAATCTCCCTGTTCGTGTATTGGACGTGTATTCAGATGATAGATCAGATGACACAAGCCGCGTTTGTAAAGAACAAGCAGCCATCAACATATCATCTGTCTCACCGGAGATAACAAGTGATTCATTATCGGAGTCCAATGCAAACAGTAAGCCTGTTGTTGACTCAGGTGGCCCTGAGGTTCTTCCTCCACGCTTGATCAGTGAAAAGACTGTGCGAGACTGGGTTTTCGACCCTCGTCTGTATATAGTTGCCATCGCTTACTCTTGTTCATGGACGTTACAATCACATGGCTATTCGTACTTGCCTCTCCTTCTTATTTACAGACTTCGTCTCAGTAAGGACTCTATCGCTTATCTCCCGCTTATTATGTCGATAAGCGCTGCAGTATCCTCTTTGCTCTCCAAGAAGTTTGTTCAGAAAATCGGAAACAAGCTGTGTTTCATCTTTGCTGCTATTTCTGTTTCTTCCTCCGGAGTAATGACTTACTTCATGGAACCTGAATCCAGTGAAAAATTGATCTACCCTGCTGTTATATTACTTGGATTTGGTTTTTCCTTGATGCATGTTAATTCCCTAAACTTCGGAACGGAACTCATTGGGGACAATAAGAAAACGAGTGGTTTTAGGAAAGGGGCACAGACTGTATAGGATGTGGAGAATATTTGCGGCTTGTTTTTTCGTCCGTTACCATCGTCTTCTCTACTCTTGGCGCATTTCTTGTGTTGTTACTTTACTGCATCGATCGATTCCAAGGAAAATGTTCCTCCACTTGCGAAGATCCAGACGCTTCCAAATGATTCGCCTTTCAAGTGAAGTAGAAAATACAGAAGTGCTGAAACACCTGGATAAGGCGAGAGGGAAACTTTGAAAAGAGTTCAACCAGAATTGCACCGTCAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NUT3	Major facilitator superfamily domain-containing protein 12 OS=Homo sapiens OX=9606 GN=MFSD12 PE=1 SV=2
Q3U481	Major facilitator superfamily domain-containing protein 12 OS=Mus musculus OX=10090 GN=Mfsd12 PE=1 SV=1
F1PZV2	Major facilitator superfamily domain-containing protein 12 OS=Canis lupus familiaris OX=9615 GN=MFSD12 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001099 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13347 all species →	MFS_2	MFS/sugar transport protein	Family	Interproscan
PF07690 all species →	MFS_1	Major Facilitator Superfamily	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039672 all species →	Family	Lactose permease-like	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR011701 all species →	Family	Major facilitator superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11328 all species →	MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005215 all species →	Molecular Function	transporter activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008643 all species →	Biological Process	carbohydrate transport	Interproscan
GO:0015293 all species →	Molecular Function	symporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0071702 all species →	Biological Process	obsolete organic substance transport	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0043.g66.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.