Gene detail

Detailed information of amic_s0044.g38.t1 in Acropora microphthalma

Genomic Location: sc0000044_pilon:541400...553001
NR annotation: XP_029188958.2, LOW QUALITY PROTEIN: adhesion G protein-coupled receptor L1-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0044.g38.t1

ATGGTGGAACTGAGATTAAGGAGAGCAATCAGAAAGCAATTAGATGTTGTAAAACCTCACAACTGCACCGCGACGCCCTCATCGTCGACAGCTGTTTTGCTGACGTGGGAGTTTCCAACAAGAAATGGTACTACAAGCAAGCCGGCAAATTACACAATTCACTACAGGCCACTCTATGCCACGAGAGGAAACTTCACTATTCTTCATGCTGGGAGGAGATCTTCCTACTTGGTGGAAAATCTTGATGTTACGACATATTATGACTTCAGAATCGTCAGGAGTGATAAAGCAGGAAATAAGGAACGCTGTAAAGTGTTGGCGAAGACTTTGCGTGATGCTTTGCTATCACTCCCAGTGCACACGGAGCCAAGCCAAGGAAACAACACGGGACTCAGGATCAAATGGACGGCTGTCAATCTTCCAGATGCCGATCTAACCTACCGTTTGTTTTTAGAATGGCATATCAAAGGCAAACTCACCGTTTATTTACTCTACGAAGGCAAGGGAACGTCGGGTTTCATCAGGGGCAAACTGCCGACTCCTTACCTTTTGTATGTTAGTGTTGTTGTTAAGAAATTGGATCACGAGGCAGCAAATATCGTAACACACCCCACAGAGAAAGCGATGATACCGCGAACCAGTGCAGCACCGAGCGATGCAAGTAAATCAAGTAACAAGACTTTTTCACTGACTATTTCAATCGATACTTTGGATTCGCATCTCGCTCGAATATCATGGAATGGTGCAATTCAACGAAGCCACGTGATTTACCAGGCACGCTGCAGAGCAGGGAATCATGTCACTGACATAGTAACATCAAACACGACGGTTTTGTTTACTGACCTAAATCAGCTGACAACATACACAATCACAGTTTGGGCCAAGGCGTTGGACGGAATGTCGCCAGACGTGACATCGGAGATCCGGTTAACTACACCAGACAAAGACGAATGCACAGACTTGGTTCACGCCTGCTCGAAGAATTCTGAGTGCGTAAATACAAGAGGAAGTTATTTTTGCCGCTGTAGGTTTGGCTGGATTGGGGACGGCAAAAATTGCATAGATGACTCAACGGACATCAAGTTCTGCGACGAGCACAATTATTTGAGTATAACTTGGATGAAGACTCCACAAGATCAAACAGCGCTCGCACCATGTCCAGCTCAATCCAGAGGCATTGCCAGAAGGAATTGCTTCAGAGCCGCTAAAGGTGGACCCCAGTGGGGAGTTCCTGATCTCAGTCAGTGCATCTCAGATGAAATGGCAACTATCGCACAACAGCTAAACGATCCAAATCCTGACTTCACTGATATTGCCAAGCAACTTGCAGACGTCACCGCCATCGTTGCACATGAGCAAAGTCCATTGCAAACTGGTGACTTGAGACTTGCCGTTGACGTCATTGAGAAAATAGCTCAGAGAGGATTTGATGACGTAAACAGTTACCCACCAAAGTTGAGAGGGAAAAAAGCTCGGAACATTGCTCAGGCCGTGGTTGAATCATCTAGTAATATTCTCCACAATAACACACTCGAGGCCTGGACATTTATGCCAAAGGATTGGATATCATCTGAGGCTAGCAAGCTCTTGAAAGGAATGGATGTGTTTTCATTGAATTTGGCCAAATCATCCTCACCAATCTCCAGAGGGGTTTTTTTGACTGAAGCACCAAACGTTGTTTTGGGTGCAATGTCCACAGGAGAGTCTGCGTCAGTTGATCAGTGGCTTCCACTAAGGAATAAAAGCGAAGACAGTGTCTTAGCCAGTAGTGTATTCTTACCAGGTTCCGTGGTCAAGTTACAGAAGAAAGAAAACCAAAATGAAACGCAGTTTGTTACATTTGTGTCTTATCGTAATCTTCGAGCCTTAATGCAGCCCGACGACGTTGAAGAGTTTAAGAATAGACCTAAGACTGAAGAGGAAGTGGGACGAATAGAATCTGATGTTTTGTCTGTGTCGCTACATCCACTGAACATCAATTCCTTTAAAGAGCCAGTTACTTTGATCCTCAGAAACACCCAGGAGAACGGCGAAGAACAGGCTAGCTGTGTTTTTTGGAACATGAACGGGTCACGTGGTTTCTGGTCAGGAGAGGGTTGTCAGGTGACCAGCAGGAATAAGAGTCATACCACGTGCCAGTGCTTTCACCTGACAAGCTTTGCAGTGCTCATGCGCGTTAAGGACATTCACCAAAGCACTGTTATGGTAAGCGGTAACTTTTAA

Transcript

amic_s0044.g38.t1

TAATAATTAAATTAATCAATCACAGTCGCGATGCCACAGAAAATATCATTTCAAAATATATCTTTTCGCCGGCATACGTGAATTTTAAACAATCATTTCAAGGATGAATCATTCTTTTCAGTCACTTGAATACGTGTAAATTGAAGGCAAATTCTATTACGTTTTGTTTAAGCTAAACAAAGTGGCCGGTGTTACGAGTTTCCATGGTGGAACTGAGATTAAGGAGAGCAATCAGAAAGCAATTAGATGTTGTAAAACCTCACAACTGCACCGCGACGCCCTCATCGTCGACAGCTGTTTTGCTGACGTGGGAGTTTCCAACAAGAAATGGTACTACAAGCAAGCCGGCAAATTACACAATTCACTACAGGCCACTCTATGCCACGAGAGGAAACTTCACTATTCTTCATGCTGGGAGGAGATCTTCCTACTTGGTGGAAAATCTTGATGTTACGACATATTATGACTTCAGAATCGTCAGGAGTGATAAAGCAGGAAATAAGGAACGCTGTAAAGTGTTGGCGAAGACTTTGCGTGATGCTTTGCTATCACTCCCAGTGCACACGGAGCCAAGCCAAGGAAACAACACGGGACTCAGGATCAAATGGACGGCTGTCAATCTTCCAGATGCCGATCTAACCTACCGTTTGTTTTTAGAATGGCATATCAAAGGCAAACTCACCGTTTATTTACTCTACGAAGGCAAGGGAACGTCGGGTTTCATCAGGGGCAAACTGCCGACTCCTTACCTTTTGTATGTTAGTGTTGTTGTTAAGAAATTGGATCACGAGGCAGCAAATATCGTAACACACCCCACAGAGAAAGCGATGATACCGCGAACCAGTGCAGCACCGAGCGATGCAAGTAAATCAAGTAACAAGACTTTTTCACTGACTATTTCAATCGATACTTTGGATTCGCATCTCGCTCGAATATCATGGAATGGTGCAATTCAACGAAGCCACGTGATTTACCAGGCACGCTGCAGAGCAGGGAATCATGTCACTGACATAGTAACATCAAACACGACGGTTTTGTTTACTGACCTAAATCAGCTGACAACATACACAATCACAGTTTGGGCCAAGGCGTTGGACGGAATGTCGCCAGACGTGACATCGGAGATCCGGTTAACTACACCAGACAAAGACGAATGCACAGACTTGGTTCACGCCTGCTCGAAGAATTCTGAGTGCGTAAATACAAGAGGAAGTTATTTTTGCCGCTGTAGGTTTGGCTGGATTGGGGACGGCAAAAATTGCATAGATGACTCAACGGACATCAAGTTCTGCGACGAGCACAATTATTTGAGTATAACTTGGATGAAGACTCCACAAGATCAAACAGCGCTCGCACCATGTCCAGCTCAATCCAGAGGCATTGCCAGAAGGAATTGCTTCAGAGCCGCTAAAGGTGGACCCCAGTGGGGAGTTCCTGATCTCAGTCAGTGCATCTCAGATGAAATGGCAACTATCGCACAACAGCTAAACGATCCAAATCCTGACTTCACTGATATTGCCAAGCAACTTGCAGACGTCACCGCCATCGTTGCACATGAGCAAAGTCCATTGCAAACTGGTGACTTGAGACTTGCCGTTGACGTCATTGAGAAAATAGCTCAGAGAGGATTTGATGACGTAAACAGTTACCCACCAAAGTTGAGAGGGAAAAAAGCTCGGAACATTGCTCAGGCCGTGGTTGAATCATCTAGTAATATTCTCCACAATAACACACTCGAGGCCTGGACATTTATGCCAAAGGATTGGATATCATCTGAGGCTAGCAAGCTCTTGAAAGGAATGGATGTGTTTTCATTGAATTTGGCCAAATCATCCTCACCAATCTCCAGAGGGGTTTTTTTGACTGAAGCACCAAACGTTGTTTTGGGTGCAATGTCCACAGGAGAGTCTGCGTCAGTTGATCAGTGGCTTCCACTAAGGAATAAAAGCGAAGACAGTGTCTTAGCCAGTAGTGTATTCTTACCAGGTTCCGTGGTCAAGTTACAGAAGAAAGAAAACCAAAATGAAACGCAGTTTGTTACATTTGTGTCTTATCGTAATCTTCGAGCCTTAATGCAGCCCGACGACGTTGAAGAGTTTAAGAATAGACCTAAGACTGAAGAGGAAGTGGGACGAATAGAATCTGATGTTTTGTCTGTGTCGCTACATCCACTGAACATCAATTCCTTTAAAGAGCCAGTTACTTTGATCCTCAGAAACACCCAGGAGAACGGCGAAGAACAGGCTAGCTGTGTTTTTTGGAACATGAACGGGTCACGTGGTTTCTGGTCAGGAGAGGGTTGTCAGGTGACCAGCAGGAATAAGAGTCATACCACGTGCCAGTGCTTTCACCTGACAAGCTTTGCAGTGCTCATGCGCGTTAAGGACATTCACCAAAGCACTGTTATGGTAAGCGGTAACTTTTAAAGCTAGTAAAGGTTGAAGTATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9HCU4	Cadherin EGF LAG seven-pass G-type receptor 2 OS=Homo sapiens OX=9606 GN=CELSR2 PE=1 SV=1
G5EDW2	Latrophilin-like protein 1 OS=Caenorhabditis elegans OX=6239 GN=lat-1 PE=1 SV=1
Q9QYP2	Cadherin EGF LAG seven-pass G-type receptor 2 (Fragment) OS=Rattus norvegicus OX=10116 GN=Celsr2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000054 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01825 all species →	GPS	GPCR proteolysis site, GPS, motif	Motif	Interproscan
PF16489 all species →	GAIN	GPCR-Autoproteolysis INducing (GAIN) domain	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR000203 all species →	Conserved_site	GPS motif	Interproscan
IPR032471 all species →	Domain	GAIN domain, N-terminal	Interproscan
IPR001879 all species →	Domain	GPCR, family 2, extracellular hormone receptor domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR036445 all species →	Homologous_superfamily	GPCR family 2, extracellular hormone receptor domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR046338 all species →	Homologous_superfamily	GAIN domain superfamily	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR051587 all species →	Family	Adhesion G-protein coupled receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45813 all species →	EF-HAND DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0007189 all species →	Biological Process	adenylate cyclase-activating G protein-coupled receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0044.g38.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.