Gene detail

Detailed information of amic_s0044.g41.t1 in Acropora microphthalma

Genomic Location: sc0000044_pilon:569143...595319
NR annotation: XP_029188959.2, dynein axonemal intermediate chain 3-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0044.g41.t1

ATGCCAGAAGAAAGAAAGGAAGAGGCAGACGCTGGGTATTCAATGGAAGATGACGGAGAAGTGGAAACTCCAGCCGACATATTGCCGCTTTTCTTTACGAGCAAAACGCAAGAAATATTTGGCTGCAAGGGGGACGAGGATGTAACGGAAGAAAATCCACACAAGCTAATCCCAAAGGAAGCAGTTCTTCAGGATTTTAAAGACAGAGCTGCAGTTTCAGATTTCCACCCAGCAAAACAAATAGTTTTGAATTACCCCGCAGATGAGCTACTGGTGGTGTATGATCCTGTTTTCAAGTATGGACAGAATTTTTACCTTGCTCTCACAGAAGAAGCCAAAGACAGAATCCTTAACCCTCCTCAAGAGGAAGTGCAGGCAGCTGAAGCAGAGGATGTTGAGGAGGAAGATGTGATCCTGACATTAACCAGATTTCCCAGAACTCCACAGCCTTGGGTGTCATATGGAAGTGAGGTGGAAGTAGAAGAGGAAAATGTTACAGAAAGCAGATCAAAGGTTAGGTTTAGAATTTCAAGGAAAAGGCGTGAGTTTGGAGCTCCTGTACACTTTAGTGACCGGAACGTGTCTGATGCTAAAGATGGCTTTGTGGAATGTCCTTCATATGAAGATGAAAGTTATGGACTGATGCGGAAAGAGTTGGACAAAGGCATACAGGCTGTTCCAGAGTTAACAGATATTGGGAATCAAACTGAATGGAGAAAGCCTCGTAATGCTGTAACACAGTACACACCTCGGACCACTGAAGAGAAATCCACTGAAGAAATCAACAAGTCAACAGATGATTTGTTGAGTTTTATTGACAAGGTCACTCCAAGGTTTCAACTGGCTTTGCAGCAGAATGAGATCTTAGATGTGTTTTATGATGACTATTTCTCTTTGGCTGACGACGAAACTACATTTGGGGCCAAATCGGATAACTATCTGAAGGAATACCAGTCCTTTACTGATCTGCATTACAGCAAAGAAAAAACTATCACAGATATTCAGTGGCATCCCGTTATGAAAGGTATTATTGCAGTGTCCTGTGGTGAAGGCCTTTCTTTTGATGATAGAGTGGACAACTTCTCACGCATTCTGATGACATCTTCCTTACTTCTTATATGGAGCTTTTCAGACCCAATTCATCCTTTGGTTCTGCTTGAAGCTCCAGATGATATATTCTCATTCAAATTTAATCCTTCTGATCCCAATATTATTGTTGGAGGATGTATCAATGGCCAGATTATTTTGTGGGACATAACAAACCACAGCGACAGATTACGCAGTCACAGGCAATCTCACGGACAAAGCAAGAAGAACTCTATGAACTCCTTGCCTGGATTTGAAGATGAAACAAGCTTTGATCGCACCCCCATCCTACGATACTCTGCAGTGTCGTCCATTGAACACAGCCACAAAACTGTTGTGACTGACATTAAGTGGATCCCCGACCACATGGAGATTGGTCGAATGGGAGTTGTTGTGGAAAACAAAGCGCAGCAGTGTAATCAGTTAATGTCGTGTGCTGCTGACGGAACTGTTTTGGTGTGGGATACGAGGCCAAGCAAGTCCGCAGCGCCTACTCAGGCTCCAGGAAATAATCCTCTGGGAACTCTACCCACTTTCAAACACCTGGACCTAACGTGGAAACCCGTCTTGAAAGTTACAGTTTCTCACCTATCTGGGACTGGCGAATTTGGACCAAGTGCATTCAGTATATATGAAAGACAAGGAGCAAGAATATCGGGAGGGAAACCAACTGAAGATAAAGAACCAGGCGGAATATCGAATTTATCGACCAGTGTTTCCAAAGGAAGAGACCAAGCCAAGCCTCTGGAGAATGTCAGCTCCAAGTTTTATGTGGGCACGGAGGAGGGGGATCTTGTTTACATGGACTGGAAACCAGAGAAAGATACAGACAGTGGGAAAATTGTCACTCCTCGACCAGAACAAGTATGGGCTGCACACGATGGTCCCATCGCCACCCTACAGAGGTCGCCTTTCTTCAGGAATATTATCCTCACTGTAGGAGGGTGGACATTCGCCATTTGGAGAGAAGGAGTCGCGAGTGGTCCACTTCTTCAGTCTGCCAGTCACCTTATGAGGCTTACTAGAGGACATTGGAGTCCGTCCAGGCCAGGGGTGTTTTTTATCACGAGAACAGATGGGAGTGTCGATGTATGGGATCTCCTCGATAGGTCTCACGAGCCTTCACTAACTCAGAATGTTACAGCTTCTCCAATTACAACAATTGCACCTCATCAGGTCTCAAGTAAACAACAACTGTTAGCTGTTGGTGACAGTGTTGGAACTTTACATGTCATGGAAGTACCCTGGAATCTTAGACATCCGTCATCAAACGAGGCAGTGGCAATGGAGAACTTCTTCGAGCGAGAAATGAAGCGCTTAGCGTTTGTAGAAGAAAGGATGAAAATACGAGCTCAAGAGAAGATACAAAGAGACGCAGAAGAAACCAAACGCCAGCAGGAAGGTAAAAAGCCCGAGGAGAATGAGGCAGATTTAGAGGCTCGACAGCGAATGAACTGA

Transcript

amic_s0044.g41.t1

AATAATAGAGGTGAATGTGACATAAATTTTGTCCTATTATGCCAGAAGAAAGAAAGGAAGAGGCAGACGCTGGGTATTCAATGGAAGATGACGGAGAAGTGGAAACTCCAGCCGACATATTGCCGCTTTTCTTTACGAGCAAAACGCAAGAAATATTTGGCTGCAAGGGGGACGAGGATGTAACGGAAGAAAATCCACACAAGCTAATCCCAAAGGAAGCAGTTCTTCAGGATTTTAAAGACAGAGCTGCAGTTTCAGATTTCCACCCAGCAAAACAAATAGTTTTGAATTACCCCGCAGATGAGCTACTGGTGGTGTATGATCCTGTTTTCAAGTATGGACAGAATTTTTACCTTGCTCTCACAGAAGAAGCCAAAGACAGAATCCTTAACCCTCCTCAAGAGGAAGTGCAGGCAGCTGAAGCAGAGGATGTTGAGGAGGAAGATGTGATCCTGACATTAACCAGATTTCCCAGAACTCCACAGCCTTGGGTGTCATATGGAAGTGAGGTGGAAGTAGAAGAGGAAAATGTTACAGAAAGCAGATCAAAGGTTAGGTTTAGAATTTCAAGGAAAAGGCGTGAGTTTGGAGCTCCTGTACACTTTAGTGACCGGAACGTGTCTGATGCTAAAGATGGCTTTGTGGAATGTCCTTCATATGAAGATGAAAGTTATGGACTGATGCGGAAAGAGTTGGACAAAGGCATACAGGCTGTTCCAGAGTTAACAGATATTGGGAATCAAACTGAATGGAGAAAGCCTCGTAATGCTGTAACACAGTACACACCTCGGACCACTGAAGAGAAATCCACTGAAGAAATCAACAAGTCAACAGATGATTTGTTGAGTTTTATTGACAAGGTCACTCCAAGGTTTCAACTGGCTTTGCAGCAGAATGAGATCTTAGATGTGTTTTATGATGACTATTTCTCTTTGGCTGACGACGAAACTACATTTGGGGCCAAATCGGATAACTATCTGAAGGAATACCAGTCCTTTACTGATCTGCATTACAGCAAAGAAAAAACTATCACAGATATTCAGTGGCATCCCGTTATGAAAGGTATTATTGCAGTGTCCTGTGGTGAAGGCCTTTCTTTTGATGATAGAGTGGACAACTTCTCACGCATTCTGATGACATCTTCCTTACTTCTTATATGGAGCTTTTCAGACCCAATTCATCCTTTGGTTCTGCTTGAAGCTCCAGATGATATATTCTCATTCAAATTTAATCCTTCTGATCCCAATATTATTGTTGGAGGATGTATCAATGGCCAGATTATTTTGTGGGACATAACAAACCACAGCGACAGATTACGCAGTCACAGGCAATCTCACGGACAAAGCAAGAAGAACTCTATGAACTCCTTGCCTGGATTTGAAGATGAAACAAGCTTTGATCGCACCCCCATCCTACGATACTCTGCAGTGTCGTCCATTGAACACAGCCACAAAACTGTTGTGACTGACATTAAGTGGATCCCCGACCACATGGAGATTGGTCGAATGGGAGTTGTTGTGGAAAACAAAGCGCAGCAGTGTAATCAGTTAATGTCGTGTGCTGCTGACGGAACTGTTTTGGTGTGGGATACGAGGCCAAGCAAGTCCGCAGCGCCTACTCAGGCTCCAGGAAATAATCCTCTGGGAACTCTACCCACTTTCAAACACCTGGACCTAACGTGGAAACCCGTCTTGAAAGTTACAGTTTCTCACCTATCTGGGACTGGCGAATTTGGACCAAGTGCATTCAGTATATATGAAAGACAAGGAGCAAGAATATCGGGAGGGAAACCAACTGAAGATAAAGAACCAGGCGGAATATCGAATTTATCGACCAGTGTTTCCAAAGGAAGAGACCAAGCCAAGCCTCTGGAGAATGTCAGCTCCAAGTTTTATGTGGGCACGGAGGAGGGGGATCTTGTTTACATGGACTGGAAACCAGAGAAAGATACAGACAGTGGGAAAATTGTCACTCCTCGACCAGAACAAGTATGGGCTGCACACGATGGTCCCATCGCCACCCTACAGAGGTCGCCTTTCTTCAGGAATATTATCCTCACTGTAGGAGGGTGGACATTCGCCATTTGGAGAGAAGGAGTCGCGAGTGGTCCACTTCTTCAGTCTGCCAGTCACCTTATGAGGCTTACTAGAGGACATTGGAGTCCGTCCAGGCCAGGGGTGTTTTTTATCACGAGAACAGATGGGAGTGTCGATGTATGGGATCTCCTCGATAGGTCTCACGAGCCTTCACTAACTCAGAATGTTACAGCTTCTCCAATTACAACAATTGCACCTCATCAGGTCTCAAGTAAACAACAACTGTTAGCTGTTGGTGACAGTGTTGGAACTTTACATGTCATGGAAGTACCCTGGAATCTTAGACATCCGTCATCAAACGAGGCAGTGGCAATGGAGAACTTCTTCGAGCGAGAAATGAAGCGCTTAGCGTTTGTAGAAGAAAGGATGAAAATACGAGCTCAAGAGAAGATACAAAGAGACGCAGAAGAAACCAAACGCCAGCAGGAAGGTAAAAAGCCCGAGGAGAATGAGGCAGATTTAGAGGCTCGACAGCGAATGAACTGACGCGCTTTAATTGCAGACTGGCCAGGTGTGTGTCAGTCCTACGTCGGTAGCCAACGAGCCTCCTCGTTCTGAGGTCACTAAGTAAACAAATAGCCCATTAACATTAAGAGCTACTGATCGATTATGACCAAATCTGAGCTGTTAGGCGTTTTCTTTCGGAAAAATAAGGGTGGGGTTGTGAAAAGGTTACTTATTTCGTCGTTCTGAGTAAGGCTAGGTCACTGACTAAACAAATGGCCTATTTTCTAATCCCACGTTCCATTGCGAGAACAGTAATTATGACCAAATGTGAGCTGTTTGGCGTTCTCTTCCAAAAAAAAAAAAGGGTGGGGTGTGGAAAGGTTACTTGTTTCGTCCTTCTGAGTAAGGCTAGGTCACTAAGCAAACAAATGGCCTATTTTCTAATCCCACGTTCCATTGCGAAAACAGTAAACGCAATTGACCCATCATGACCAAATCTGAGCTGTTAGGCGTTCTCTTGCGGAAAAAAAGGGTGGACGGTGTGGAAAGATTACTTGGTTTCAAAAGAAATTGCAAGCCGTTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IWG1	Dynein axonemal intermediate chain 3 OS=Homo sapiens OX=9606 GN=DNAI3 PE=1 SV=1
Q95JP0	Dynein axonemal intermediate chain 3 OS=Macaca fascicularis OX=9541 GN=DNAI3 PE=2 SV=1
B2RY71	Dynein axonemal intermediate chain 3 OS=Mus musculus OX=10090 GN=Dnai3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003231 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

No Pfam domain signature was detected for amic_s0044.g41.t1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR050687 all species →	Family	Dynein Intermediate Chain	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12442 all species →	DYNEIN INTERMEDIATE CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0036156 all species →	Cellular Component	inner dynein arm	Interproscan
GO:0036159 all species →	Biological Process	inner dynein arm assembly	Interproscan
GO:0045503 all species →	Molecular Function	dynein light chain binding	Interproscan
GO:0045504 all species →	Molecular Function	dynein heavy chain binding	Interproscan
GO:0060294 all species →	Biological Process	cilium movement involved in cell motility	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24722	DNAI3, WDR63; dynein axonemal intermediate chain 3	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.