Gene detail

Detailed information of amic_s0044.g53.t1 in Acropora microphthalma

Genomic Location: sc0000044_pilon:750480...770416
NR annotation: XP_015747940.1, PREDICTED: adhesion G protein-coupled receptor L3-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0044.g53.t1

ATGTATGAAATTCAAGTATTTTGCTACACAGCAGCAGGACGGAGTCCATCTGCCCACGTACAGGCTTTCACTGGAAAAGGTGCTAGAACAAAAGATGCTAGAGCAATAGAATATCCCCAAAGCAACAGTGGCAACACACTGGAAGTCAATTGGACTACATTCAATAATCTAGAGGAAGAGGAAACCTGTGATGTAGAGTACTGCACAGGGAGTCAATGCCGCAATTTTAAGCGTCACAGTTCCCTGGTTGTCAATAACCTCTCGCAATATACAACTCATTTGGTGAAGGTGCGAGGGAGAAAAGTCTCTGCAGGTCCCTGGAAAGTCACCGTCAGGGTAACTCCACCGTTTTGTTCAGGGGAGGAAGTGTGTAAATTGGAAGTGCTGAAGAACATTTTATGGCCACCAACATTCAAAGGAGAAAGCATCACGAAGCCCTGTCCTCCAGGGTTTGGTCAGGGGAAGGCCACCCGCAACTGCTCAAAGGAAAAAGCTGTTTGGGACAAACCGGATTTGTCTAAGTGCGTGTCCGAACGTTTCACCAGACATCTAGACAAGGTGGTGAACGCAGAAACGATAAACTCGACGACTGCAGTGTCACTAGCCGAAAATCTGAAAAAGATCACGGACCCTGCAAGTCCTGTTGTTCAGTTTAGCGGCAACTTGTTTGCCGCTGTTGATATTCTCACGACGCTGGGGAACAAAACTGCAAAAAATCCGCCAATGAACGAGGAAGAATCAAAGCAGTTTATGAAAAGTGTGGTTCATGTCGCGGATAACCTTCTTGATGGAGGCTTGACCGATGTGTGGCTGGAGTCGCCTCAGGAGTCTCGAGTCACGAAGGTGACAGATCTTATGGTTTCCATAGAGAGGATGGCGCTGATGACTGCTGCCGTTTCAAACAGCACCAAAACTATCAGCATAAATACTACAAACGTCGTTTTAAAGTTCCGTTCCGTGCAGAGGCATGCTCTTGCAGAAGAAGCTGTGTCATTTTCAGCTGGAAAAAAAGGATTGCAAAGCGGAATTTACTTGCCAGCATCTGTGATTAAAAAACGACAAGAAACTGATGGGCGAGGCTTCTCACTTTTGTGTTTCAGTTCATCAACCAACAACGAAACACACATAGTAGAGAGAGGTATCCCTAACGCACATGCAAGTCCTAATCTGATATCGTTGTCAACCAATGACAATGAGTCGGACAATTTTACTGAACCTGTGAAGATTATTGTCCAAATCTTTAAGAATAACAGTTTGAAACCCTGGTGTGTTTTTTGGAAAGGTGATGCAGGTGTTTGGTCATCTGAAGGATGCGTGGTTCATTCTTCCAATTCAACCCATACTGTGTGCCATTGTGATCATTTGACGAGCTTCAGTGTTCTTATGCAATTTACGGAGGATTCCCACGCGATAACGGAATCAGACAAGGAGGCTTTGAGTCTCATCACATACGTTGGCATCAGTATATCTTTAGTGGCGCTGGTCATTGCATTCGTGACATTCTGCTCTTTGGGATTCTTGAATTCAAACCGGAATTTTGCTCACATTAATCTTGCGTTGTCTCTTATCTTGGCTGAACTTTTATTTGTTTTGGGAATTGACAAAACCCAGAATCAGACTGCTTGTTTTGTGATTGCTGTTTGTCTTCACTATTTGTTCCTGGTGTCATTTGCCTGGATGGCAACGGAGGGGGTCATTCTTTATCTCATGTTAGTGAAGGTTTTCCCAACGGCCAGTAAAGGACCTAAAAGAAGACTTCTATTCATCTGCTCTTGGGGTATTCCTACGGTTCCGGTCGCTACAGCCATTCTTGTCCATAAAGAAGGTTACACAACAGAAACTCATTGCTGGTTGTCAATCGCCGATGGGATGATCTGGAGCTTTGTGGGCCCGGTTTTAATGGTCTGCTTGGTGAATATCTACTTCTTAGGCAGAACTTTTAAGGTCATGGCAGATCGAACGTCCAATCAACCAGCGCGGAATCCGCCAGGTTTTCGATACTGGATCAAGGCATGCGCGGTATTAACTTGTCTTTTGGGTACCACTTGGCTTCTGGGAATGTTTTTCTTAGACCAGTCGTCCGTCGTCATGGCGTATCTATTTAACATTTTTAACGTTCTGCAGGGTTTGCTTATCTTTATCTTTCACTGTTTAGCTGACGAAAGGATTCGTGCCGAATATAAAAGAGTTCTTTGCTGTCATGGGAGCAGACGAGATAATCTTCGAAATTTGCGAAATGAGTCAGGTGGAAAGATGACTCCAACAAAGCATTCACAGACTACCTTGTCATCAAGGCTTGCTGACAAGAAAGCACAGCTGAAAGGAAAACGTATCGTTAGCTGTGAAGATGAAACGGCAGCGGTGACTCATGATTCCGGGTTCCAAATTGCATTTGGTGAAGACGACTCAATTCAGAACACCGATTCTTACGTCGAAATTCCATCGGCGTCTGCGAACATGAAACAAGTTGAAGACGAAGCGGAAATAACCTCTGCTTGGGACACTTCTGAATTTGAAGACTACGGTAACAACGACGACAGTAACTCAGTAGATGTGTTCTTTGAAGACATATCTTCAAGTTTGATGTGTATTCCCCCGGACAAAACAAGTATGTTTTCAAAACAGGAATCCTTGATTTCTTCGTCCGATTGCTGA

Transcript

amic_s0044.g53.t1

TAATTTGACGTCTAATACAATGTATGAAATTCAAGTATTTTGCTACACAGCAGCAGGACGGAGTCCATCTGCCCACGTACAGGCTTTCACTGGAAAAGGTGCTAGAACAAAAGATGCTAGAGCAATAGAATATCCCCAAAGCAACAGTGGCAACACACTGGAAGTCAATTGGACTACATTCAATAATCTAGAGGAAGAGGAAACCTGTGATGTAGAGTACTGCACAGGGAGTCAATGCCGCAATTTTAAGCGTCACAGTTCCCTGGTTGTCAATAACCTCTCGCAATATACAACTCATTTGGTGAAGGTGCGAGGGAGAAAAGTCTCTGCAGGTCCCTGGAAAGTCACCGTCAGGGTAACTCCACCGTTTTGTTCAGGGGAGGAAGTGTGTAAATTGGAAGTGCTGAAGAACATTTTATGGCCACCAACATTCAAAGGAGAAAGCATCACGAAGCCCTGTCCTCCAGGGTTTGGTCAGGGGAAGGCCACCCGCAACTGCTCAAAGGAAAAAGCTGTTTGGGACAAACCGGATTTGTCTAAGTGCGTGTCCGAACGTTTCACCAGACATCTAGACAAGGTGGTGAACGCAGAAACGATAAACTCGACGACTGCAGTGTCACTAGCCGAAAATCTGAAAAAGATCACGGACCCTGCAAGTCCTGTTGTTCAGTTTAGCGGCAACTTGTTTGCCGCTGTTGATATTCTCACGACGCTGGGGAACAAAACTGCAAAAAATCCGCCAATGAACGAGGAAGAATCAAAGCAGTTTATGAAAAGTGTGGTTCATGTCGCGGATAACCTTCTTGATGGAGGCTTGACCGATGTGTGGCTGGAGTCGCCTCAGGAGTCTCGAGTCACGAAGGTGACAGATCTTATGGTTTCCATAGAGAGGATGGCGCTGATGACTGCTGCCGTTTCAAACAGCACCAAAACTATCAGCATAAATACTACAAACGTCGTTTTAAAGTTCCGTTCCGTGCAGAGGCATGCTCTTGCAGAAGAAGCTGTGTCATTTTCAGCTGGAAAAAAAGGATTGCAAAGCGGAATTTACTTGCCAGCATCTGTGATTAAAAAACGACAAGAAACTGATGGGCGAGGCTTCTCACTTTTGTGTTTCAGTTCATCAACCAACAACGAAACACACATAGTAGAGAGAGGTATCCCTAACGCACATGCAAGTCCTAATCTGATATCGTTGTCAACCAATGACAATGAGTCGGACAATTTTACTGAACCTGTGAAGATTATTGTCCAAATCTTTAAGAATAACAGTTTGAAACCCTGGTGTGTTTTTTGGAAAGGTGATGCAGGTGTTTGGTCATCTGAAGGATGCGTGGTTCATTCTTCCAATTCAACCCATACTGTGTGCCATTGTGATCATTTGACGAGCTTCAGTGTTCTTATGCAATTTACGGAGGATTCCCACGCGATAACGGAATCAGACAAGGAGGCTTTGAGTCTCATCACATACGTTGGCATCAGTATATCTTTAGTGGCGCTGGTCATTGCATTCGTGACATTCTGCTCTTTGGGATTCTTGAATTCAAACCGGAATTTTGCTCACATTAATCTTGCGTTGTCTCTTATCTTGGCTGAACTTTTATTTGTTTTGGGAATTGACAAAACCCAGAATCAGACTGCTTGTTTTGTGATTGCTGTTTGTCTTCACTATTTGTTCCTGGTGTCATTTGCCTGGATGGCAACGGAGGGGGTCATTCTTTATCTCATGTTAGTGAAGGTTTTCCCAACGGCCAGTAAAGGACCTAAAAGAAGACTTCTATTCATCTGCTCTTGGGGTATTCCTACGGTTCCGGTCGCTACAGCCATTCTTGTCCATAAAGAAGGTTACACAACAGAAACTCATTGCTGGTTGTCAATCGCCGATGGGATGATCTGGAGCTTTGTGGGCCCGGTTTTAATGGTCTGCTTGGTGAATATCTACTTCTTAGGCAGAACTTTTAAGGTCATGGCAGATCGAACGTCCAATCAACCAGCGCGGAATCCGCCAGGTTTTCGATACTGGATCAAGGCATGCGCGGTATTAACTTGTCTTTTGGGTACCACTTGGCTTCTGGGAATGTTTTTCTTAGACCAGTCGTCCGTCGTCATGGCGTATCTATTTAACATTTTTAACGTTCTGCAGGGTTTGCTTATCTTTATCTTTCACTGTTTAGCTGACGAAAGGATTCGTGCCGAATATAAAAGAGTTCTTTGCTGTCATGGGAGCAGACGAGATAATCTTCGAAATTTGCGAAATGAGTCAGGTGGAAAGATGACTCCAACAAAGCATTCACAGACTACCTTGTCATCAAGGCTTGCTGACAAGAAAGCACAGCTGAAAGGAAAACGTATCGTTAGCTGTGAAGATGAAACGGCAGCGGTGACTCATGATTCCGGGTTCCAAATTGCATTTGGTGAAGACGACTCAATTCAGAACACCGATTCTTACGTCGAAATTCCATCGGCGTCTGCGAACATGAAACAAGTTGAAGACGAAGCGGAAATAACCTCTGCTTGGGACACTTCTGAATTTGAAGACTACGGTAACAACGACGACAGTAACTCAGTAGATGTGTTCTTTGAAGACATATCTTCAAGTTTGATGTGTATTCCCCCGGACAAAACAAGTATGTTTTCAAAACAGGAATCCTTGATTTCTTCGTCCGATTGCTGAATTTGCGCGTGGActtgtgtaggcccaattccaatgctagggttgatccctagttgaataattgggtatgaaaaacttcacagaaatgttaggcctcattggaacttggaatcattactgtcaatatgctactgaaggacaacAGCTAACGGTCATTTTAGCTCTAGTCATTTTTTAAATATAAGTAGAAAATATGTAAGCCTCCAATTTGGTAGATGGTCTTTGCGTTACAAAGTTTTGCGGTTCAACTACAAATTCGGTGATGACAACATTTCCGGTTTGAAGACTTTTTGTCTGTCGCTACAGTTGTTTCAAAATTAACTCTTTTGTCGATAGAAACTCGAAAGAACATCTGGAAGATCGTTAAATAAGGGCAAGTTTGAATAAATTAAATTTTCTCAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O97827	Adhesion G protein-coupled receptor L3 OS=Bos taurus OX=9913 GN=ADGRL3 PE=2 SV=1
Q80TS3	Adhesion G protein-coupled receptor L3 OS=Mus musculus OX=10090 GN=Adgrl3 PE=1 SV=3
Q9HAR2	Adhesion G protein-coupled receptor L3 OS=Homo sapiens OX=9606 GN=ADGRL3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000054 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02793 all species →	HRM	Hormone receptor domain	Family	Interproscan
PF16489 all species →	GAIN	GPCR-Autoproteolysis INducing (GAIN) domain	Domain	Interproscan
PF01825 all species →	GPS	GPCR proteolysis site, GPS, motif	Motif	Interproscan
PF00002 all species →	7tm_2	7 transmembrane receptor (Secretin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000832 all species →	Family	GPCR, family 2, secretin-like	Interproscan
IPR017981 all species →	Domain	GPCR, family 2-like, 7TM	Interproscan
IPR036445 all species →	Homologous_superfamily	GPCR family 2, extracellular hormone receptor domain superfamily	Interproscan
IPR008077 all species →	Family	GPCR, family 2, brain-specific angiogenesis inhibitor	Interproscan
IPR000203 all species →	Conserved_site	GPS motif	Interproscan
IPR001879 all species →	Domain	GPCR, family 2, extracellular hormone receptor domain	Interproscan
IPR017983 all species →	Conserved_site	GPCR, family 2, secretin-like, conserved site	Interproscan
IPR032471 all species →	Domain	GAIN domain, N-terminal	Interproscan
IPR046338 all species →	Homologous_superfamily	GAIN domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12011 all species →	ADHESION G-PROTEIN COUPLED RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0016525 all species →	Biological Process	negative regulation of angiogenesis	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007189 all species →	Biological Process	adenylate cyclase-activating G protein-coupled receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04593	ADGRL2, LPHN2; adhesion G protein-coupled receptor L2	-	G protein-coupled receptors	ko04030	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.