Gene detail

Detailed information of amic_s0045.g56.t1 in Acropora microphthalma

Genomic Location: sc0000045_pilon:624613...628358
NR annotation: XP_015754251.1, PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O15514	DNA-directed RNA polymerase II subunit RPB4 OS=Homo sapiens OX=9606 GN=POLR2D PE=1 SV=1
Q9D7M8	DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus OX=10090 GN=Polr2d PE=1 SV=2
Q1JQ91	DNA-directed RNA polymerase II subunit RPB4 OS=Bos taurus OX=9913 GN=POLR2D PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008216 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03874 all species →	RNA_pol_Rpb4	RNA polymerase Rpb4	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038324 all species →	Homologous_superfamily	Rpb4/RPC9 superfamily	Interproscan
IPR005574 all species →	Family	RNA polymerase subunit Rpb4/RPC9	Interproscan
IPR006590 all species →	Domain	RNA polymerase Rpb4/RPC9, core	Interproscan
IPR045222 all species →	Family	DNA-directed RNA polymerase II subunit Rpb4-like	Interproscan
IPR010997 all species →	Homologous_superfamily	HRDC-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21297 all species →	DNA-DIRECTED RNA POLYMERASE II	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006352 all species →	Biological Process	DNA-templated transcription initiation	Interproscan
GO:0030880 all species →	Cellular Component	RNA polymerase complex	Interproscan
GO:0005665 all species →	Cellular Component	RNA polymerase II, core complex	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0031369 all species →	Molecular Function	translation initiation factor binding	Interproscan
GO:0034402 all species →	Biological Process	obsolete recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0044237 all species →	Biological Process	obsolete cellular metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03012	RPB4, POLR2D; DNA-directed RNA polymerase II subunit RPB4	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.