Gene detail

Detailed information of amic_s0045.g57.t1 in Acropora microphthalma

Genomic Location: sc0000045_pilon:629055...632658
NR annotation: XP_029196753.1, LOW QUALITY PROTEIN: Bardet-Biedl syndrome 1 protein-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0045.g57.t1

CGATTATTTTCTTCCCAGAAAATGAGTTCTCAGGTAGATACTTCCTCGGATGGATCAAATCAGAGAGATGAAGAAGAATCTCCAGAAAAGAGTATTTGGCTCAATGCCCATCTTGACCCAATGGCATGCCTCTATACCTTCTCCACCTCAATTTCATTAGCAGACCTGAATGCTGATTCAGATTACAAACTTCTTGTTGCTGACCTTGGTACTGGGACATTTGACATGAAACTCAAAGTGTTCAAAGGCACCAGCTTATACATGGAGAGTGCCATCATCGATCTACCAATAGCTCTTGTGTCATTTTACATGGACACAAATGATCCCCGCACACCTGCAGTAGCTGTTGCCTCTGGCCCTTTTATTTATGTGTACAAGAATTTAAGACCATATTTCAAGTTCACCTTACCACCATTGTCAGTCAATGCAGTTGAGCAAGATCTTTGGAACCAAGCTAAAGAAGACAAGATTGATGTCCATGTCCTGAGAGAGATGCTTGAAAGCTTGAAGAATGAGGGTAGCGAAGGGATGCTCTCTGTTCGTTCCCTAAAGTTGCTTTCTCTTCAACCAGAGGAAGTTGAAAGTTTCGCTAATGTCCATAAACATGCACCACTGAAGAGACAAACAGTCATCACATGCATGGGAACAATGAAGAAGAGCGTTGCAGATGATGATGCTGTCAGCTGTCTTGTGATTGGCACAGAGAGTAAAGACGTTTATGTCCTGGATCCTGAAGCCTTTACTGTCCTTGCAAAGATGAGCCTTCCAAGTGTTCCTGTGTTCATTTCAGTTAATGGCCTGTTTGACGTTGAGTTCCGCATTGTTGTTGCATGCAGAGATGGAAAAGTTTACACTTTGAAGAGAGGCAGCAAGATGGCAAAAGCATGCATTGAGCTTGCAGCTCAGGCAGTTGGTCTGGAGCGCACGGGGAAGAGTATCATTGTAGGCTGTATGGACAATACCTTGCAGTGTTACTCAACTAAAGGGAAGAAGCTCTGGACTGTCTACCTCCCCAGCAACATACTCACTATGAGTCTGATGGATCACAAAGTGAGGGGTTTCAAGGCAGTCATGGTTGCACTAAGCAACGGTGAAGTCAGAATCTACAAGGAAAAGTATTTGGTCAATACTATCAAAATGTCCGATGCTGTAACAGCCTTGAAGTTTGGCCGCTTTGGTAGGGAAGACAGTGCCCTGATTCTAATCACAAAAGGTGGTGGACTGTTTGTGAAAATCCTCAAGAGAACAGCAACCTTTGAAGGGAAGGACCTAACTCCAGGCCCACCCCCTGCACAATCCATCAAGCTAAATGTCCCCAAGAAGACAAAACTCTTTGTTGATCAGACGCTTCGTGAGAGGGACAGTGCCAGTGGCATGCACAGAACGTTCCAGCATGATCTTTATTTGTTGCGTCTCATGTCAGCAAGATCTTACGTCAGTGCTTTGCAGAAGAGTTTGAACCCCATCTCATCTTCAGCTACAGAACCTCTGAAGCTGTCAGCACAAGTCCAGGGCATTGGCCCAGCATTCAAACTGACAGTCAACCTTCAAAACATTTCATCCAGTGTGCCATCATCAAAACTACTCATCACCTTTCAGTTTGATGATTCGTTGTATGCATTGTCGAAGCCATGCATTTTTGTTCCTCTGCTTGTTCCAGGGCTGATGTATGCTTACGAAACGCTTGTTGAATGCATCAGTGATAAGGGAATTTCAGATGTTATCAAAGTGTTTGTTTTGCATCAGGGAAACAGTATTCCTGTCATTACTGCTGTGATTAATATGCCAGTAAGTGAAGCACTGGTCATTGTATGAGACAGAGGGCTTAAATTGTAGAACACGTTGATGCCATCATCTCAACTTTTAAGACAGTGTTGTGATGCCCAACCAATGAAATGTGTTGCTGCTGCAGCAATGGGGAGTTCAATTTAAAATGGTAATGACAAGGCCAAATGCATAAATGGTTGAGTGAGGAAAATAATAATAATTATTATTGTTTCTCCCATGCAGCACTTTTTTTGGTACATTTCTGTACCAAAGAATGAAGATCTGACAATAACCTGAACTATCAAAATAAAATCTTTCatagactgatttggctaactcaatgttgtacccaattaaaatctctcagggttaacgttctttgtgtgttggatttacatgataatatagcattcacatttaaatgatatggaaatactttgagctaaacgttttattcccaaaggatttgaattgggtacaacattgactgagccaaatcgctctattCTCTGACATTACCATTCATGCTAGTACAATGAAAGGACACCTCatctacatggcctcatcacaaaacactaaacctacagcaaattgtatcttgaagtgacagtttcattgcaatagctgttgcagcttcttaaactTGCAAGTGTTTGGCATTGCAGCTGTTTTAGTTGTTTTTAAATCTAAGTTCTTGAGATACATTTTTTGTGTTGTTCAGTCTTCATTCAGTTCTGGTATTGAGCCAATCACATTATACACTGTTCCATATGAGATCTAGAGCTCCTTCATCCTTCAGTGAAACAAGCAATCAAATCGAATACATGTACATATTAAGTGTTGTAAGAAAATTAGACAAAGGCATGAAACAATAAGAGGTTCATAATTTAAAGATCAAGTCACAGGCCATTTTTGCCGCAGCTATGAGTTAGCACAACAGAAAAAAACTTACATTTATGTTAACAGTGACCTTTTTGCAGCAGCAAAGGAAAAGAAGGCAGACATGGGTAGTTAAAAGAGAATATCTTGATATTGCCCATGTCTAATCTAAAGGCCTTTTTGCTCCAAGTCCCACCTATAAACAGGGCTTGCATGGTTTATTATTGTTGCAAACGTTGTTTCCACGGTGTATTATAATTAATTTTGTAGCAAACATTGTTGCCACTGAACACGGACTTTTTTGTGCTGGGTTTCACAAATGCCACAGTTTCACTTACCATCAATAGTAATGTTTACTGTTTTCAATAAAAGGATGTGCAATTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NFJ9	BBSome complex member BBS1 OS=Homo sapiens OX=9606 GN=BBS1 PE=1 SV=1
Q3V3N7	BBSome complex member BBS1 OS=Mus musculus OX=10090 GN=Bbs1 PE=1 SV=1
Q9NEZ7	BBSome complex member BBS1 OS=Caenorhabditis elegans OX=6239 GN=bbs-1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007040 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14779 all species →	BBS1	Ciliary BBSome complex subunit 1	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028784 all species →	Family	Bardet-Biedl syndrome 1 protein	Interproscan
IPR032728 all species →	Domain	Bardet-Biedl syndrome 1, N-terminal	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20870 all species →	BARDET-BIEDL SYNDROME 1 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005113 all species →	Molecular Function	patched binding	Interproscan
GO:0005119 all species →	Molecular Function	smoothened binding	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005930 all species →	Cellular Component	axoneme	Interproscan
GO:0034464 all species →	Cellular Component	BBSome	Interproscan
GO:0061512 all species →	Biological Process	protein localization to cilium	Interproscan
GO:1905515 all species →	Biological Process	non-motile cilium assembly	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16746	BBS1; Bardet-Biedl syndrome 1 protein	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.