Gene detail

Detailed information of amic_s0045.g58.t1 in Acropora microphthalma

Genomic Location: sc0000045_pilon:632769...636490
NR annotation: XP_029196754.2, protein DDI1 homolog 2-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0045.g58.t1

CGCATTCAATGTGATTCATTATTTTATCGGAAACAATAATTAGCAAATTTAATTCTAGCAAGGTACTTCAAAGGATTACACATTAGTTCATTTAATCGTTGTGCGGCAACATGAAACTCACCGTAACTTTAGATGGCGATCAGATCTTTAGCGTGGATGTTAGCGATGACCTGGAACTGGAGAATTTCAAAGCTCTTCTTGAGTTCGAAAGTGGAATTCAGTCACCGCAAATCGTGATTTTTCACAACGGCGAACAACTTAGAGACAACAAAAAGACGCTGAATGGTTATGGGATCAAAGATGGTGATGTACTATTAATGCAACGCTTAATGCAACCCGCAGAACCTCCACGACAAATTTCAGGTATAGGTAATGTGAGTGGTTTAGACTGGGGAAGTATTCAGGTACCTGGTCAGTCACGTCCGCAATCAGCACATAATCAAGTTCGAACAGCGCAGCCCCAGCAGGTGGCTGTAGACAGAGACAGCCCAGAGTACATAAGAGACATGTTTTTAGCAGATCCTCATCAACTTTCACTTCTAAAAGAGAGGAACCCAGAACTTGCAGATGCTTTATTAAGTGGAAATTTACAGAATTTTGCTGGTGTACTCCAGAGACAGCGTCAAGAAAGAGCTGATAAGGATATGCAGCGCATTAGAACCATAAATGCGGATCCACTTGACCTTGAGGCCCAGAAACAAATTGCAGAGGAGATCCGCATGTCAAATGTCAATCAGAACATGGAGATTGCCATGGAATATTCTCCTGAATCCTTTGGCAAGGTGGTCATGTTGTATATCAACTGCAAGCTTAATGGACACCCTGTCAAGGCATTTGTTGACTCAGGAGCGCAAATGACATTCATGAGCGCAAGTTGTGCTGAGAGATGTAACGTCATGCGGCTGTTGGATCAGCGGTGGTCAGGAATTGCTAAAGGCGTGGGGACACAGAAAATTGTTGGTCGTGTTCATGTGGCACAGATTGAGATAGAGAAGGTCTTTTTGCCATCATCGTTCTCGGTAATGGAAGATCAGCCCATGGATTTAGTATTGGGGCTAGATATGCTGAAAAGGCATCAGTGTTGCATTGATCTGAAGAAGAACGTACTGCGTATTGGTACGACTGAAACCGAGACTCCGTTCCTTACTGAGTCAGAGCTTCCCGTGACTGACCGTCTAACTTTTAGTGATGGCGAAGGAGAGAACATGACTCAAGACAAGCAACTGACAGAAATGGAAGATAGAGAACTGGCTGAAGCAATGATACGATCTGCGAATGACAGTTCACAAGGATCAAGCTCTTCTTTCTCTTCTCAGTCAACATCTTCTTCAAGCATGTCTGGTATTGCTAGCATTCCTGAGACAAGCATTCAGAGGATCGTAGATCTTGGTTTTACACGGGATCAAGCAATTCTAGAACTGCAGAGAACCAATGGCAATGTTGAGGTAGCCTCTGCAGCACTGATAGCAAAATCCCTTTCATTTCCACCACAAACAAGGTGATGAAGGGAGAACATAGGCTTTCTTGAAATTTGGACGGATAATTTAATCTTGTTTCCTATTTTTTATTTAATATTAAGGATTTTAACTTGTTCAATCATCGTTTCTGTGGACGTATATTGGTGACGTTGTTTTATTTTTATATGTTTTCCATTATTTTCAAATCTGAAAGGCCAATAATCATAATTTGTGAAAAGTGACGTTTTGAACGAATTGTGTGGGCGAAGTTTATCAGAAGATTGGCAGTTTAGATTTCAGATTTAATTCTCCTTCATCTGAGTTATTCCAAGAGCTTACTCTAGCAGAGGGGTCAGACTCAAGTTTGCAAACCTTTTCATTCTATCAAGTTGACTCGTGTGACACACAAGTACTCAACCAGACAACCACACTATTGTTTATGTCAGTAACGGTTAGATCACTTTAGTTTTTTTAATGGTTTTTAGGACTTTGCTGCCTTATTTATTGTACTTAGCAAAACCAAACCTTGTCACGTAAGAGAAAATAGTTTCTGGATCTTTTCCTTCTTTTAGGTGTATAGATGTTTGTGAAAAAGAAAGTTAATTTTAGTAAGTAGGCTTGTAGTTCTCCTTGTGACTTCCACATTCCAGTTGAAATGAGAAATAAGAAGCAGACATTGTGCCCCAAGCTAATCTCAATAAGAATGTTTTCTCAAATGTCAAATATTTTAAAATATACGTTCCACACTGATTCTTGCTTTTTCACTTCTCAAAGTTGACAATAAAAGCAATAATTGATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6TH22	Protein DDI1 homolog 2 OS=Danio rerio OX=7955 GN=ddi2 PE=2 SV=1
Q5TDH0	Protein DDI1 homolog 2 OS=Homo sapiens OX=9606 GN=DDI2 PE=1 SV=1
A2ADY9	Protein DDI1 homolog 2 OS=Mus musculus OX=10090 GN=Ddi2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008116 (this species only)
Ubiquitin family	UBD\|Alpha-Helix\|UBA · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00627 all species →	UBA	UBA/TS-N domain	Domain	Interproscan
PF09668 all species →	Asp_protease	Aspartyl protease	Family	Interproscan
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR015940 all species →	Domain	Ubiquitin-associated domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR019103 all species →	Domain	Aspartic peptidase, DDI1-type	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR033882 all species →	Domain	DNA damage inducible protein 1 ubiquitin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15397 all species →	SODIUM-GLUCOSE COTRANSPORTER REGULATORY PROTEIN -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11885	DDI1; DNA damage-inducible protein 1	-	Proteasome	ko03051	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.