Gene detail

Detailed information of amic_s0045.g97.t1 in Acropora microphthalma

Genomic Location: sc0000045_pilon:1257407...1273814
NR annotation: XP_044171704.1, LOW QUALITY PROTEIN: uncharacterized protein LOC114948667 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0045.g97.t1

atggcatcgtgttcaaggcagcctcagcaacatgatagaaccattaaagtcaccattttggcttccgagtggggatcccattggggtggactttccaccataaacagagagttggccattcagttggccaaatttcctgaggttgaagtcactttctttttgccaaaatgctcctacgagagtaagaaggaagcgcagcaccatggcatatccattcttgaggcagagagacgaccagggtacgaaaaactcgactggctcagctttccaccgaaacatttgaagattgatgtgattgttggtcatggtatgaaactcggtaaacaggctcaagttatccgctactctcacaaatgcaggtgggttcaagtggtacacacagatccagaggaaccagtaatgttgaaaagttttgagagtccaatctcattgggagaacagaagcaccatgttgaggtagagctatgcgagatggctgatttggtagttggagttggacccaagctgacagaagccttttgcaagtaccttagctggtgtaaaaaagatcaagatgtatttgagttgactcctggagtttttgctgactttgcctgtgttgaacaagttcctgtcaagcacaaatccttcagtgttttggtctttggtcgtggagattctgaagattttgagttaaagggatttgatattgcagcaagatctgttgctgccttacctgacatcacccttgtttttgtgggagctcctgaaggaaaacacgatgggattgctaaacgtttccttgatttgggcattcccgcaaaccgtctgagggtaagaggttacacagaccgagaggctctgaagtggttgttctgtgaggtggatcttgtgctgatgccgtcaagaagtgaagggtttgggttgacaggtctggagggtctttccgctgggcttcctgttcttgttagcaaaaactctggttttggagaagtcctggtgaatgtaccacatggttcttcatttgtcattgactctgaagatcccagtgcatggatagcagccatcaagagcatctggaagaaagagagacagttacgacttcatgaggctaagttcctgcgtgactcctatggaaagaggtaccgttggtctgaacagtgcgcaaatctccttgagaagatggttagactacttgaGAATAGACAAGtgacccctcctgagattaatctacgtggtcacagggccttggaggcctataacagagctcttacagaaggaagaactcgtgtaggaaggattccgatcatgttgattggacaggaccgttcaggaaaaaccagcctaaagaagtcgctccagggacttaagttcaacccaagtgaagatagcaccgttgggatagatgttgatccatcctacttcaaagtaaccactgagatatggaagacaggggaaaaggatcaagcggtaaacaaagaggaaatggctgcttcttttgatcatcatgtagctcgcgtaactattgagaatctaagggaacgaaaattgaattctgaagtaaagactatggacaaagcaaaagatcttaaagggctgcccactggaatcactcatgatcaagtttactcgtctgcagattcgttcacaactgcacgaatcgaaacggaaaattatgcagattctccaaagtcacccggtgctgcacacgtcgttagtggcagtcgaatctttcaaaccacagagaattatccatcaccgacgaaagccagagatgacactgttccctcggaaatgatacctagagggatagaaacgttgattaagaaactacgggcaaaagttgacaaggtagatagtgaggatgacatctattcggttttttgggatttcgccggacaatcagtttattatgagacccatcaactctttctgacgtcaagggcaatctaccttttggtttatgacctaagccgggatcctgagggaattgcacagcccgtgaaaaggcaaggagtcttcgcgaaaattgaagagaagtcgtgcacgaaaactaacctcgactatctatactgctggatgacttcagtttcttcacaatccagtcgaattgaagatcacgatttgagttcagcttcgacatccacggttctgccaaagacacttcctcctgtcttcttggtttgtactcattctgaccaaccttttgacggaaaaggttcttctgacctagcccttgaaatatacggtttcttgaaaagaaaatcatacggcgaacagctgttccatgatgtgtttaaagtggacaatactaaatcaggcgggcgaaaggaatgtctcgaagtaaagcgcttgagagaaagtattttagctgttgctaaggagctaccacaaataaaagagatcattccgatcaagtggttgaagtatgaaaaagcgctccagggcgtactggatgagggccgtaagtgcatcactattgaggacgccaaacagatcgcctctgaagtctgcaaaattcacgacgatgaagagttcgtgacagtgcttaactttttgcacgatcagagaattttaatacattttgatgacactgtggaactcaacaaattggttgtgttggatcctcaatggttgatcgatgtgtttaagacagtaataactgttaagcgttatgacccgcaagaaaggggctttaacgatttgtggcttaaactagaaacagaaggaatcctggaagaaaaactcctccggcatgcgtgggatcaaattgtcggagaacatcacacctttgaaagcctcatcgcaatcatggagaggttcagcttgctgtgttcttggtcctcgtcaaatgagccacatagtaaggagtatcttgtgccgtctatgttaaggtggtatcagccagaggagatcgccaagttgattacctcagcaagtcttccgtcccttttcgtcaagtttgaatctggtcaagtgccttcaaatctgtttccacgacttgttgttcagttccttcagtggggaagaaatgaagaattttggagcagagattaccctcagctgtataacagtttcgccagaatttacactgctgaggacgaaaactattcagtggtactcttatgccattcctccatgattgaagtcgttgttcataaaggaaatgctcgttcggcaacgggcgacctacaggcagatttaggcatctcgcctggagatcaacgcgattcatttgaagtggtttgtgctcgtaaagttttcggacggctcgtgttgttgctcgagtgcttgcgaaaagagttttgctggttgaagggaatgaagtatcaagccgggatcatttgtccggtttgttgtgataaaaggcttgtgaattattgccgcactcatcacaagcaaaattgtgggcaggaagagtgtcttcatttcatacctgaatcggagctgcgcaatttaaatcagcatcttacttgcactaggtcggctgttgcagtaaataacaaagtttacagcaaggattttacagcgtggtttgccagtccacgtgaagaggtaacttacactttACTGTGTTTTTTTCCAAAAGATTTCTTGTTTCCTCTTGTAAAAGACTTGATTTTTGGAAATGAACCCGGGTGTTaaagtgaagacaagtcagttacccttcctggcaatgtcgttgaatcgctagtgtctccgtcatgtgagccaaaagaaattgtacttcagctacaagaaaacctccacttgggccaaacggatttggaaaaacccaccccggaaacaacgagaatgatccgttgttttgcagaaacagcgaaggattcaaagcggattgatgttgtcaaacacctgagagaaatcacaccagcaggaacaactggtccattgttgcctgggaaacttgatgtttgggatgtcccagttgagacgatgagagaacttaccataaatttgaccgTAACAGACTGGCAGTGGAGGGCCGTTGCGGAGAAACTGGGCTTAAGGCCGCATGAGATCGAATTTCTTGATATGAGATATAAGAACCCCTGTGACGCTGCATTAGCCTTTCTGGCGCGACGTGATGGTATGAATGTGGATGATCTGTACGATGCGTTAACTGAGTGTGGGATGCCTATGCTGGCTGATATTTTGTGA

Transcript

amic_s0045.g97.t1

CTTTTTTTTCCAAATAACTTCTACACTTTTGCCGAAGATGCCCCTTCACTCTGTGTGGTGtcctaattgacatgcttcctcatggcatcgtgttcaaggcagcctcagcaacatgatagaaccattaaagtcaccattttggcttccgagtggggatcccattggggtggactttccaccataaacagagagttggccattcagttggccaaatttcctgaggttgaagtcactttctttttgccaaaatgctcctacgagagtaagaaggaagcgcagcaccatggcatatccattcttgaggcagagagacgaccagggtacgaaaaactcgactggctcagctttccaccgaaacatttgaagattgatgtgattgttggtcatggtatgaaactcggtaaacaggctcaagttatccgctactctcacaaatgcaggtgggttcaagtggtacacacagatccagaggaaccagtaatgttgaaaagttttgagagtccaatctcattgggagaacagaagcaccatgttgaggtagagctatgcgagatggctgatttggtagttggagttggacccaagctgacagaagccttttgcaagtaccttagctggtgtaaaaaagatcaagatgtatttgagttgactcctggagtttttgctgactttgcctgtgttgaacaagttcctgtcaagcacaaatccttcagtgttttggtctttggtcgtggagattctgaagattttgagttaaagggatttgatattgcagcaagatctgttgctgccttacctgacatcacccttgtttttgtgggagctcctgaaggaaaacacgatgggattgctaaacgtttccttgatttgggcattcccgcaaaccgtctgagggtaagaggttacacagaccgagaggctctgaagtggttgttctgtgaggtggatcttgtgctgatgccgtcaagaagtgaagggtttgggttgacaggtctggagggtctttccgctgggcttcctgttcttgttagcaaaaactctggttttggagaagtcctggtgaatgtaccacatggttcttcatttgtcattgactctgaagatcccagtgcatggatagcagccatcaagagcatctggaagaaagagagacagttacgacttcatgaggctaagttcctgcgtgactcctatggaaagaggtaccgttggtctgaacagtgcgcaaatctccttgagaagatggttagactacttgaGAATAGACAAGtgacccctcctgagattaatctacgtggtcacagggccttggaggcctataacagagctcttacagaaggaagaactcgtgtaggaaggattccgatcatgttgattggacaggaccgttcaggaaaaaccagcctaaagaagtcgctccagggacttaagttcaacccaagtgaagatagcaccgttgggatagatgttgatccatcctacttcaaagtaaccactgagatatggaagacaggggaaaaggatcaagcggtaaacaaagaggaaatggctgcttcttttgatcatcatgtagctcgcgtaactattgagaatctaagggaacgaaaattgaattctgaagtaaagactatggacaaagcaaaagatcttaaagggctgcccactggaatcactcatgatcaagtttactcgtctgcagattcgttcacaactgcacgaatcgaaacggaaaattatgcagattctccaaagtcacccggtgctgcacacgtcgttagtggcagtcgaatctttcaaaccacagagaattatccatcaccgacgaaagccagagatgacactgttccctcggaaatgatacctagagggatagaaacgttgattaagaaactacgggcaaaagttgacaaggtagatagtgaggatgacatctattcggttttttgggatttcgccggacaatcagtttattatgagacccatcaactctttctgacgtcaagggcaatctaccttttggtttatgacctaagccgggatcctgagggaattgcacagcccgtgaaaaggcaaggagtcttcgcgaaaattgaagagaagtcgtgcacgaaaactaacctcgactatctatactgctggatgacttcagtttcttcacaatccagtcgaattgaagatcacgatttgagttcagcttcgacatccacggttctgccaaagacacttcctcctgtcttcttggtttgtactcattctgaccaaccttttgacggaaaaggttcttctgacctagcccttgaaatatacggtttcttgaaaagaaaatcatacggcgaacagctgttccatgatgtgtttaaagtggacaatactaaatcaggcgggcgaaaggaatgtctcgaagtaaagcgcttgagagaaagtattttagctgttgctaaggagctaccacaaataaaagagatcattccgatcaagtggttgaagtatgaaaaagcgctccagggcgtactggatgagggccgtaagtgcatcactattgaggacgccaaacagatcgcctctgaagtctgcaaaattcacgacgatgaagagttcgtgacagtgcttaactttttgcacgatcagagaattttaatacattttgatgacactgtggaactcaacaaattggttgtgttggatcctcaatggttgatcgatgtgtttaagacagtaataactgttaagcgttatgacccgcaagaaaggggctttaacgatttgtggcttaaactagaaacagaaggaatcctggaagaaaaactcctccggcatgcgtgggatcaaattgtcggagaacatcacacctttgaaagcctcatcgcaatcatggagaggttcagcttgctgtgttcttggtcctcgtcaaatgagccacatagtaaggagtatcttgtgccgtctatgttaaggtggtatcagccagaggagatcgccaagttgattacctcagcaagtcttccgtcccttttcgtcaagtttgaatctggtcaagtgccttcaaatctgtttccacgacttgttgttcagttccttcagtggggaagaaatgaagaattttggagcagagattaccctcagctgtataacagtttcgccagaatttacactgctgaggacgaaaactattcagtggtactcttatgccattcctccatgattgaagtcgttgttcataaaggaaatgctcgttcggcaacgggcgacctacaggcagatttaggcatctcgcctggagatcaacgcgattcatttgaagtggtttgtgctcgtaaagttttcggacggctcgtgttgttgctcgagtgcttgcgaaaagagttttgctggttgaagggaatgaagtatcaagccgggatcatttgtccggtttgttgtgataaaaggcttgtgaattattgccgcactcatcacaagcaaaattgtgggcaggaagagtgtcttcatttcatacctgaatcggagctgcgcaatttaaatcagcatcttacttgcactaggtcggctgttgcagtaaataacaaagtttacagcaaggattttacagcgtggtttgccagtccacgtgaagaggtaacttacactttACTGTGTTTTTTTCCAAAAGATTTCTTGTTTCCTCTTGTAAAAGACTTGATTTTTGGAAATGAACCCGGGTGTTaaagtgaagacaagtcagttacccttcctggcaatgtcgttgaatcgctagtgtctccgtcatgtgagccaaaagaaattgtacttcagctacaagaaaacctccacttgggccaaacggatttggaaaaacccaccccggaaacaacgagaatgatccgttgttttgcagaaacagcgaaggattcaaagcggattgatgttgtcaaacacctgagagaaatcacaccagcaggaacaactggtccattgttgcctgggaaacttgatgtttgggatgtcccagttgagacgatgagagaacttaccataaatttgaccgTAACAGACTGGCAGTGGAGGGCCGTTGCGGAGAAACTGGGCTTAAGGCCGCATGAGATCGAATTTCTTGATATGAGATATAAGAACCCCTGTGACGCTGCATTAGCCTTTCTGGCGCGACGTGATGGTATGAATGTGGATGATCTGTACGATGCGTTAACTGAGTGTGGGATGCCTATGCTGGCTGATATTTTGTGACCTGCTGACTATCTTAGGGTAAAGAAATGGCGTCTGCGTAACAGTTCTTCTAGGAACCAGGAGCTGTTGGAACCAGTATTTTTGAGGACGCATCCTCAGTAGTATGACTGCTGGAACAGTTTTGCATGTTATATTCCACGTTGATATCTTGCAGCAAACTAGATACGTGGCTAAGAGTCTTTTTCAGTTTAGGATATATTTGCCCTCACATGTAAAATAGGAAACGTTCAATTTAAGAAAGGCCAAATTGGCTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6XHB2	Probable serine/threonine-protein kinase roco4 OS=Dictyostelium discoideum OX=44689 GN=roco4 PE=1 SV=1
Q5S006	Leucine-rich repeat serine/threonine-protein kinase 2 OS=Mus musculus OX=10090 GN=Lrrk2 PE=1 SV=2
Q5S007	Leucine-rich repeat serine/threonine-protein kinase 2 OS=Homo sapiens OX=9606 GN=LRRK2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000151 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08477 all species →	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF00531 all species →	Death	Death domain	Domain	Interproscan
PF16095 all species →	COR	C-terminal of Roc, COR, domain	Family	Interproscan
PF20706 all species →	GT4-conflict	Family 4 Glycosyltransferase in conflict systems	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR032171 all species →	Domain	C-terminal of Roc (COR) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47679 all species →	PROTEIN TORNADO 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0045.g97.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.