Gene detail

Detailed information of amic_s0046.g10.t1 in Acropora microphthalma

Genomic Location: sc0000046_pilon:118352...125365
NR annotation: XP_029210599.2, circadian locomoter output cycles protein kaput-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0046.g10.t1

ATGGCCAGCGACGAAATCAAACGACGCAATGAAACGGAGAAAAAACGTCGCGATCGATTCAATACTTTGATCGACGAGCTCGCAGGATTCATTTGTGATCGCTGTAAAACAAAGAGAAGCAAACACAAGTGTTCGATTTTGAAAATCACGAAAGAATATTTTCTCGAGCAAGAAGAACTTGCTGGTCAGAAGACTTCGCAAGACCCTTTAGGATGGGAAAAACCCGATTTTCTGGCAGACGACGAGCTTTCCTTCGTGTTGCAGGAATCATCTAGGGCTTTCGTATTTGCTGTGGACAGAGAGAGCAAAATTGTTTACACTTCAGACAGTGCTCTCAATGCGGTTGGATATTTGCCTTGTCAAATTTTACAGCGGAGTATTTACGATTTTATTCATCTTCAGTACCATTTCATTTTTCAGGGCTTGTTGTCGAATTTTTTGATATCCTCGGTTGGTGATTCTAAGGTTTCCCAACGCTTTGAACCGTTTTTATGCTATTTTGGCCGCGGCCCTTACGCCCAGGAAAAGGGTTTTGAAGCTGTCATTTGTCATGGAACAATCTTTAAAAATTTACAACCCGACGAGGGTCAAACACTCGAAGATTCTCATTATATTCTTGTGTTGGCAAAACCATTAAATCGAGTATCGACAAACACGACACTCGTTTGTTCAGATGGTCCACAAACAAAATTCACTGCAAGGATTTGTGTTGTTGGAAAATACGAATACCTCGACAAGCGAGTGGTTTCCGTTCTGGGTTTCTTCCCTTCAGAATTAATCGGAAATTCATTTTTCGATTACTGTCACCCCGAAGACCTTGAAAATTTGGCCGAGTACTGCGAAATTCTTCTCATGACAGGGAGACTAGCCACTTGCTACTACCGTCAGCTAACAAAGGCACAGTCATGGATCTGGCTTCGATCGCTTTTCGATCTGAGTTACAGCGATTGGAGCTCCAAGCCGCAAGCAATAACTTGTCTCTCTTGGGTGGTACACCATGAAGAGGTGTGTGCAAGACATGAGGACATTTTAGCATCCGATCGAGTGAGATTTGAACAAATCCGCGCCGCTCACCAAAACGCAAATGGCAAGTTAATATCCTCTCCTAGTTCAAACCAATCACCAGAAAGCGCCTGGCCAGGTGTGACGAATGGGAGAACCATCGGATCGGAGAGAGAAATTAGCAAGGTCAATCGTGTTACTTCAACAATCGTTTCTGATGTTCAATCGGACAGCAATATCAATAAATTAACAACAAACGAATTGGTCGATTTTCAAGGCTTTCTGGCGAGACTTCAATTCCCTGAAAAGTTGACGACTGCACAAGAAAATGCTCATCTACTTTTGACCGGAATGTACACAGACCTTTTAAATACAATCAAGAAACAAAACGAGGAACTGGAAAGTATTCAGAAGCAATTAAAAGTAGAAGGAGAATTGCGCGATCTCCTTGAGACACTCGAACAAGTGAAAGCCCGAAATGATATGAAAGAGGAGTATGCTGTCACTAGCAAAATTATGGAGAAATTTGAAGAGGTTCGCAATGAGTGCACAGGGACCCGAGCAGAAAAACCTCTAGCAGGTAGCTATGAGCTTTGCCGCAAGAGACTTGAAGAAATTCGCGGTGACAAGCGCATCCGAAAGCGACAAGATGCTACCGTGAATGAAGTACAAACTGCTGAGCTGTTTTCTGACCTATTTGGTCAACAAAACATTTATTCACTTCTCCATAAAGATCAACAACAATCGCAGTTACGAGTTCATGATGAAGATATTTTCTTTGATCAAGCTAAAAGTTTGCAAAACCAAGGCCAGCAATTTCAAATGCAACAGCAAGTCTTGACAGAACAGTTGCACAGCGCGCAGAATTTACCCCAACAAAGGCAAAGAGATAGGAATGGGAATATAATGCCTCAGGCCGAACAGGAATTGGGCCTAGAAATCCCCAATAATCAGCAACAAACAGAGCATCGAATTGAATCATGGGACTTTCCGCCAGCCCAATCCTCCACCATCTTTCCTTTCGACTTATTGCTGCTCTCAGCGCCAAACTCTGCTGCTTTCCCTATGTATCCTCCAGAAGAGCACTGA

Transcript

amic_s0046.g10.t1

GACTTGCGAGGAGGGATCTACGTCATCGCTGGGCTTAGAGCTTGAATGGGTGGAACAATCCGAACCTCCTAAATAGATGAGGCAACCAATCAAAACTTCCCATCCGTTAATAAAAAGAACAATTGTTGATGAGATAACTACCCCAAAAATATTAAATCCCTGGTGGGAACAGTCAGAGTAGTTCAGGAACCTCTTCTGCAACATATGGCCAGCGACGAAATCAAACGACGCAATGAAACGGAGAAAAAACGTCGCGATCGATTCAATACTTTGATCGACGAGCTCGCAGGATTCATTTGTGATCGCTGTAAAACAAAGAGAAGCAAACACAAGTGTTCGATTTTGAAAATCACGAAAGAATATTTTCTCGAGCAAGAAGAACTTGCTGGTCAGAAGACTTCGCAAGACCCTTTAGGATGGGAAAAACCCGATTTTCTGGCAGACGACGAGCTTTCCTTCGTGTTGCAGGAATCATCTAGGGCTTTCGTATTTGCTGTGGACAGAGAGAGCAAAATTGTTTACACTTCAGACAGTGCTCTCAATGCGGTTGGATATTTGCCTTGTCAAATTTTACAGCGGAGTATTTACGATTTTATTCATCTTCAGTACCATTTCATTTTTCAGGGCTTGTTGTCGAATTTTTTGATATCCTCGGTTGGTGATTCTAAGGTTTCCCAACGCTTTGAACCGTTTTTATGCTATTTTGGCCGCGGCCCTTACGCCCAGGAAAAGGGTTTTGAAGCTGTCATTTGTCATGGAACAATCTTTAAAAATTTACAACCCGACGAGGGTCAAACACTCGAAGATTCTCATTATATTCTTGTGTTGGCAAAACCATTAAATCGAGTATCGACAAACACGACACTCGTTTGTTCAGATGGTCCACAAACAAAATTCACTGCAAGGATTTGTGTTGTTGGAAAATACGAATACCTCGACAAGCGAGTGGTTTCCGTTCTGGGTTTCTTCCCTTCAGAATTAATCGGAAATTCATTTTTCGATTACTGTCACCCCGAAGACCTTGAAAATTTGGCCGAGTACTGCGAAATTCTTCTCATGACAGGGAGACTAGCCACTTGCTACTACCGTCAGCTAACAAAGGCACAGTCATGGATCTGGCTTCGATCGCTTTTCGATCTGAGTTACAGCGATTGGAGCTCCAAGCCGCAAGCAATAACTTGTCTCTCTTGGGTGGTACACCATGAAGAGGTGTGTGCAAGACATGAGGACATTTTAGCATCCGATCGAGTGAGATTTGAACAAATCCGCGCCGCTCACCAAAACGCAAATGGCAAGTTAATATCCTCTCCTAGTTCAAACCAATCACCAGAAAGCGCCTGGCCAGGTGTGACGAATGGGAGAACCATCGGATCGGAGAGAGAAATTAGCAAGGTCAATCGTGTTACTTCAACAATCGTTTCTGATGTTCAATCGGACAGCAATATCAATAAATTAACAACAAACGAATTGGTCGATTTTCAAGGCTTTCTGGCGAGACTTCAATTCCCTGAAAAGTTGACGACTGCACAAGAAAATGCTCATCTACTTTTGACCGGAATGTACACAGACCTTTTAAATACAATCAAGAAACAAAACGAGGAACTGGAAAGTATTCAGAAGCAATTAAAAGTAGAAGGAGAATTGCGCGATCTCCTTGAGACACTCGAACAAGTGAAAGCCCGAAATGATATGAAAGAGGAGTATGCTGTCACTAGCAAAATTATGGAGAAATTTGAAGAGGTTCGCAATGAGTGCACAGGGACCCGAGCAGAAAAACCTCTAGCAGGTAGCTATGAGCTTTGCCGCAAGAGACTTGAAGAAATTCGCGGTGACAAGCGCATCCGAAAGCGACAAGATGCTACCGTGAATGAAGTACAAACTGCTGAGCTGTTTTCTGACCTATTTGGTCAACAAAACATTTATTCACTTCTCCATAAAGATCAACAACAATCGCAGTTACGAGTTCATGATGAAGATATTTTCTTTGATCAAGCTAAAAGTTTGCAAAACCAAGGCCAGCAATTTCAAATGCAACAGCAAGTCTTGACAGAACAGTTGCACAGCGCGCAGAATTTACCCCAACAAAGGCAAAGAGATAGGAATGGGAATATAATGCCTCAGGCCGAACAGGAATTGGGCCTAGAAATCCCCAATAATCAGCAACAAACAGAGCATCGAATTGAATCATGGGACTTTCCGCCAGCCCAATCCTCCACCATCTTTCCTTTCGACTTATTGCTGCTCTCAGCGCCAAACTCTGCTGCTTTCCCTATGTATCCTCCAGAAGAGCACTGATCGGCTGATCTTACTGTCTATCCCTGCAAGAACAATGTTGGCTCAAGGCCAAATTATTTAAGCAATTTCTAGCCtttcttttataaactggagtggtttatacggatttccacccctgagaaaacctctatcaataacatctgtatcgacaatttttgacatgtctctgagatagcgatggccagtcagctgctggcacgtcactggctctatttagcaccatgaatgagtggtactgcattctctttctgaaacgtgaatttagtcggcttcctcaggaagacttctatataataaactaaataatacatggttgctcggagatatggaatttctcttctcgtgttcaactcgagtgagcgcagcgaacgaatgagatatcgactggaacactcgaagagaaattccatatttccgcacgccaatgtattattctctatgtaAAGAtggtgctgcgtcggtgggagagcgaaacatgaaaatttggttttagtaaacgagttgataaaggccgaattactaagatttggagagccgacgcttcgagcgttcgcccttcgtcagggcgaatagaattgtgggttgttgttggtttttgtgaggatgtggaagagctttaccattggtggaaatatggttacattaatttgagtaaattaattaaatgagagacgttcattaattccgtgcagttagagtgtacctagttgaaaaatgaatttttgtccgagatttttcggctttctgtgtttcatgttgtaaggataggccgccatttgtcatgctgtggtgggagtgattagaaatattaaaatggcgcgcagctggttttgacgcatcggtgttgttttttttcctacatctcgcaggtgttcgccaaacggatctgccaatcttcaccttgtttcgcctaggtagatctttgtatgacgtgaggttatgcaatggatgacatttatggaaatgtacgtaaagtggtcagtgattttggcggaagggctaacgctcgaaacttcgctctccaaatctttaacgttggtaactggccctttatcagctcgattgataaaaccaaattttcaaattacatGAGGCCTTCATATTTTGATCCATTTTATCACCGAAAAACCCTTGTGCCGCAGGTAACCCAAGCTTAAACATGGCACACATATTAAGAGAATTTACTGCATTCGTAAGCCCAAAAATTGACGAAGAGGACGCATTCATCTGAGGCGAGATAGGTTAATTTTAATGCAATGTAAGGTAGAGGAACTTTGATGACGTTTTTTTAAACGGTACTGATATATTACACACGATTTTCTCCAGCGAGGGGTCTAAATTATATTCTTGATTATTTTGGTGAGTGCGCGGACTGGTCCCGCGGGAGGGAAAAAGAGAGAACGACATCAAAAGAAAAACAAAAACAGCTGGTCATAGAAAACAGAACTAAATAACATCGGAATATTTTATTCTTCTCCTCCAAACATATACAAAGATAATACAACATCTAAAATACT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O61735	Circadian locomoter output cycles protein kaput OS=Drosophila melanogaster OX=7227 GN=Clk PE=1 SV=3
O15945	Aryl hydrocarbon receptor nuclear translocator homolog OS=Drosophila melanogaster OX=7227 GN=tgo PE=1 SV=3
Q8QGQ7	Basic helix-loop-helix ARNT-like protein 2 OS=Gallus gallus OX=9031 GN=BMAL2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003739 (this species only)
Transcription factor family	bHLH · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00989 all species →	PAS	PAS fold	Domain	Interproscan
PF08447 all species →	PAS_3	PAS fold	Domain	Interproscan
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR047230 all species →	Family	Circadian locomoter output cycles protein kaput-like	Interproscan
IPR000014 all species →	Domain	PAS domain	Interproscan
IPR013767 all species →	Domain	PAS fold	Interproscan
IPR035965 all species →	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR013655 all species →	Domain	PAS fold-3	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46055 all species →	CIRCADIAN LOCOMOTER OUTPUT CYCLES PROTEIN KAPUT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0032922 all species →	Biological Process	circadian regulation of gene expression	Interproscan
GO:1990513 all species →	Cellular Component	CLOCK-BMAL transcription complex	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0046.g10.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.