Gene detail

Detailed information of amic_s0046.g2.t1 in Acropora microphthalma

Genomic Location: sc0000046_pilon:12426...17961
NR annotation: XP_029211062.2, transcription initiation factor TFIID subunit 11-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0046.g2.t1

ACGAAATGGAGAAAGACGCCTCTGAAAGCGGCGCTTTAAAGCGAAAACTTGAGGTTGATACAACTCTAGAAGGGTCAGAATCAGATTTGAACTCACCACCTTCAAAACTTCGAGCTACAGATGAGAAGAGAATTGACCAAGATCCCACAAAAGCGAGCGTTCTAGCGAGTACTAGTGCTCCAAATCCGACAGTTTCTGGCGAAAACAGCGGCGATTTGTATGACGAACGAGAAAAAATGCAGCTGTTGGTTTCTTCATTTTCAGAGGAACAATTAAATCGCTATGAAATGTACAGGCGAGCAGCCTTTCCAAAGGCTGCCATAAAAAGGCTAATGCAAAGTGTCACAGGAGGAACCTCAATCCCTCCCAATGTTGTCATAGCAATGGCTGGTATAGCAAAAGTTTTTGTTGGAGAAGTTGTTGAGGAAGCTTGTGATACAATGGAACAATGTAAAGAAAAGGGTCCTATCCAACCCAAACACCTGAGAGAAGCCGTCAGAAAACTTAAGAGAAAAGGCCTTGTTCCAAATACGCGGTATCAAAAGCGGCTTTTTCATAGGTGATGTTGAAGTAGTCAAAAGTGAGTTGACGCCTTCAAGAAATTCAAATTAGAGTGCCCCGCGGAAAGTTTGAAGAAGGGTATAAGTGGCGTCGAAATTATCCTGGCGAGGTTCTCAAGAGTGGAGAGCCAAGCAAGAGATTCACAGTGTTGGTTGGAGTTTGTTATATTGGCTCAGAAACAATTACACCATGAAAGGATCAACAAAACCTTGCGCCAGGCGAAAAGCCTATGATATTTGATGCAGACATGAATAAGAAGTTTAAGAAGACTTTTTGTATTTCGTTGTTTCATTGTAATTTAATAACTGGCTGACCAAATACTTACTTACCCGAATCATAATGACTACAAGAAGCCATTTTGTTTGTCTAGGGCTTCTCAGGGGTGAACGAGTCGTGGCGAACAACCTGCGAGCTAACCAatccgagaacgagaacgaagattagtacgagttttggcctcaagatgtgtattgctttgttttcgtctttgtcttcatcatgctcatgtactttgtaactttagattgtaaacaacGACCACTTTCGCGTTCTCCCAACTTTACACTGGCTTTTTACGAGGTTCCTAAGAAAACAAATTGCAACGACGTCAATAATGAAAGTAAATGTTCCTGAGTTTAAAaagtacaaaattcagctttgaaaatctcgttctttttaagactacttttactcaaaatttcgttttttacaataactgcagaaaccctcgcgcgctcattggctaatttttattgtcaatttgcggacagacacatgaaatttataatttatgcgatattgacgcaacgagcgagagcagaaaatttgaaaaagtcgatctgtcactttttaaccaatagaaagcgtccgttttttccatcagccaataagagagcgaggagaattatgaatttggtcgcgtcaaattgaataaacgttgaagtttctgccgcatttttgtctctcattttgacttaattttgtcccctctacctttctgttattgtaaaaaacaaatggacgtcggtttttcatgcgtctgtcctgttattgacaatgaatttcgtcatagcattgtcaaagtagtcagcggatacactcggctatcgcctcgtggatccacacctactttgacaaagttatgacgaaattcatgatcaataacaggacagacgcatgaaaaaccgacgtcaatttgttaagtagacgtgcggcctacaacgagtttcccgacagcgctacagtgccacggacaacgacgcatgcgcagcatgaccaagcaagaaaactcgtactcgtcttcgttctcgttGCCCaccttcaaattagggttcgaggacgacaacgagtacgagtcttaagttctgagcacgcgcactgccacaattgtcgccaaccgaagctaaagcgcgttcttagtacgaaaaagtcctactgggaattgtactcgtactgcaatctgaaggttgTTAATTCTTAAAATATTCAATTAGGTCATTCCGCATTCACCCAGATCATAACCATTTAACATTCATAATCATTTAGGTCATTCCGCATTCACCCAGATCATGCTTTGTAACTAGGCAACTGGCTGCTTTCAGCGAGTTGGGTGCCTCAACCACTTACATGTTAATTAAGGGCCAAAAAGTCCTCCACCTTGAATTGTCGTGTTAACTTACTTAAATACTTTAAGATTCGTATTCCTTTTCTTTCTCGTATGCCTCAGTGATGTCGCAGACACATTGCGCGTTGATTGGGAGCGAGAAACTACTTGGGGGGAAAGATGAATTGGTGAGATTTACGAAGCGACTTTAAGGCGAACGCATTCACGACCACAAAGGTGCGAATTTTTCAAGGTGCAACGCAGTTCTCATTTCAGTTCTGAGTGGTTAGATACATTTATGTACAAGTTATTCGAATTGTAATGTTGAAAAAAGTTTGAAACTTGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A6NLC8	TATA-box binding protein associated factor 11 like protein 2 OS=Homo sapiens OX=9606 GN=TAF11L2 PE=2 SV=2
A0A1W2PQ09	TATA-box-binding protein-associated factor 11-like protein 11 OS=Homo sapiens OX=9606 GN=TAF11L11 PE=1 SV=1
Q15544	Transcription initiation factor TFIID subunit 11 OS=Homo sapiens OX=9606 GN=TAF11 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008084 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04719 all species →	TAFII28	hTAFII28-like protein conserved region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045127 all species →	Family	Transcription initiation factor TFIID subunit 11-like	Interproscan
IPR009072 all species →	Homologous_superfamily	Histone-fold	Interproscan
IPR006809 all species →	Domain	TAFII28-like protein domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13218 all species →	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 11-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0005669 all species →	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0051123 all species →	Biological Process	RNA polymerase II preinitiation complex assembly	Interproscan
GO:0046982 all species →	Molecular Function	protein heterodimerization activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0046.g2.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.