Gene detail

Detailed information of amic_s0046.g77.t1 in Acropora microphthalma

Genomic Location: sc0000046_pilon:1209476...1224744
NR annotation: XP_029209647.2, electroneutral sodium bicarbonate exchanger 1-like isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0046.g77.t1

ATGATGTCGATGGAATATCGGCCCAGAGAAGTATCAAAGATTGGTACAGAAGTAGCAGTTGATCCACATATGCTTGATGTTTATCACTCACAAGTTGAAGATGTAGATATTCAAGACCACCGTCAAGTTTACGTAGGGGTTCACATTCCCTTACGGCCTCGGAAACATCATCACCAAAAACATCACCATCGTAGAAGGCGCAGACCGAATGGTTCGATCGAATTCAAATCGGATGATTCAGATAATCAATCATCGTCACTACCAACTGATAAAGTGCGTTTTATTCTTGGTGGGGAAGAGAATGATGAATCTCACAAAATGTTTACGCAGTTGGCACATTATCAGAGTGAGAATGAGGAGTGGAGGCAAATGGCCCGTTGGCTTAAGTTTGAGGAAGCGGTTGAAGAAGGTGGAGATAGATGGAGTAAACCGCATGTTGGAACACTGTCACTCTACAGTTTGTTTGAGCTTAGAAGTTCTCTGTTACGAGGGACTGTTCTTTTGGACATGAATGCCACCAATGTAACTCAGATTTCTGATCTTGTGCTTGATGACATGGTAAACAAAAACCATTTGGATCAAGATTGTCGACAGAAGGCACGGGAGGTTCTTCTGAAAAAACACCGTCATCAGTGTAAAACCAAAAGTTCCAAGAAGGGGAAGACAAGCATTGGTAGCTTTGGCTCGTTTGCAAAGAAAGCTTCTTCAGCTGGGTTGAGTGAAATGCTCAAACGTTCAGACTCTACTCCAAAATCGGCAGAACAGCAGAAGTTAGAGGTAGTGAATGAAGTTGATCAGAAGGGAGAATTCCCTCACCTTCCGTCGGCTGTCGATTTGGTAGGGAAACAAAAAGACAGTAATGCCAAAGAAGAGATTGAAATGTCCAACGCGGAGGTCTGTGTAGAGTATGATAACAATTTTATGAAGAAAATTCCACCTGGGGCACAAGCATCAAATGTCCTCGTTGGAGAACTGGATTTCTTGAAGAAACCTGTGACAGCGTTTGTGCGCCTTGAGAATGCCTGTGTTCTTGGAAATATCACCGAAGTTCCTGTTCCCACTCGATTTATCTTTTTAATGTTGGGCCCTCCAGGCACACCCGGTCGATACCATGAAGTTGGCCGTGCCATTGCAACCTTGATGTCTGATGAGGTTTTTCATGAGGTTGCATACAAAGCACAGTGTCGTGAGGATTTGTTGGCTGGAATTGATGAATTTCTGATGCAGGTCACAGTTTTGCCTCCAGGTGAATGGGATCCATCCATCCGAATTGAACCTCCAGATGCTGTTCCCTCCCAGGATAAGCGTCTTGAGAGTGCTAAATCAGGAGGGAGTGGTGGAGGCGAAGAGCATGATCCAGCTGGTGACAGGGAGGAGCAGCTTGCCAAAACAGGAAGGTTGTGTGGAGGTCTCATTGCTGATATGAAGCGGCGAGCCCCATGGTACTGGAGTGACTTTAAGGATGCACTTAATCCTCAGTGCATTGCATCGATCATTTTTATTTACTTTGCATGTCTCACCCCAATTATTACATTTGGAGGTGTAATGGGCACAAAAACAGGCAAAAACATGGCTGCAATGGAGCAGATTCTAGCAGGTGGCATCGGTGGAGTCCTGTTCTCGTTGTTTGGTGGTCAGCCTCTTATTATCCTCGGAGCTACTGGTCCTATGTTGGTCTTTGAAGAGATCCTCTACACATTTTGTGAGGGTTTCGGCATTGACTACCTTCCATTCCGCTTGTGGATCGGAATTTGGACAATGCTGTACTGCTTTATCCTTGTTATAACAGATGCCAGTGCATTTGTCAGATACTTTACGCGTTTTACTGAGGAGTCCTTTGCTACCCTCATTGCTCTCATTTTCATAGTAGAGGGTTTCAAGAAGCTAGTACATGTTCTACATGACAGCCCAGTGAAAGTTGGAGATGCAAATGGCTACATAGACTGGAATGCGTGTCAATGTGTTCCTAAGGATATGGTAGACAATTTCACACGTTTCAACAGTAACACCAGTTTTTACCTTGATTATCCATTGGGAGATTGTGAGAGATATGGTGGCCATCTCGTGGGTCAAGCATGTCACAATAATGTATTTTTCCTGTCAGTTATCCTTTCTCTGGGAACCTTTGCACTTGCACTTTCATTGAAAGGATTCCGTACCAGTCCTTATTTCCCAACTAAGGTACGTGCAGTGGTCTCCGACTTTGCCATTCTGATTTCGATCATGGTCATGGTGGGAGTAGACGTTGCATTTGGTGTCAACACACCAAAGCTTGACATCCCATTGAAATTCCAGCCTACAGCTAGTGAGAAGAGAGGATGGATTATTCCACCACTTGGTAAGAACCCTGTATGGACCATTCCTGCTGCAGCTATTCCAGCGTTGCTTGCTACCATCTTGGTTTTTATGGATCAGCAGATCACAGCATTGATTGTGAACAGACGAGAGCATAAGCTAAAGAAAGGAGCTGGCTATCATCTGGATTTACTCCTTGTTGCCATTATCATTGGTATTTGTTCATTGCTTGGCTTGCCATGGGTGGTAGCAGCAACTGTACTTTCAGTTGGTCATGTGCAGAGCTTGTTTGTTGAATCGCAATGTACAGCTCCTGGTGAAAAAACGCAATTTCTTGGTGTAAGAGAGCAGCGTGTCACTGGCACCTTTATCTTCATCTTGATTGGTTTGACTGTTTTCATCGCACCAATTTTGAAGTATCTTCCTATGCCAGTTTTGTTTGGACTGTTCTTTTATATGGGATTTTCTGCACTGAAGGGATTGCAGTTTTTTGAGAGGCTGAAAATCATCTTCATGCCAGTCAAGCACCAGCCTGATCTGATGTATTTGCGTCAAGTTCCTCTCAATAGAATCCACATATTCACGTTTATCCAGCTGTTTTGTTTGGCTGTTCTGTGGGCCATTAAATCTACCCCAGCTGCTCTCATCTTTCCTGTCATGGTTTTAATGTTGGTCGCTGTGCGCAAGGTTATGGAAAAAATTTTCACCCTCTATGAACTTGAGGTGTTGGATGACTTGATGCCCGAGAACATTAAAAAGCAGAAGGCTGAGCTCGAAGCAAAAAAGAAGAAAGAGGAGAACTTCGAATATGATGACGAGGATAATGATGACGATTCAGAGGGCAAAAAGCACACACCTGGGAAAGAACTAAATGGCAGTGCTCATCAATCAGATACCCCCATGAACATCTCGGAAGAAATGTGCAAAACCTCTCTCTGGAAGACTTTTGTGAAAGATGGTTCCACCAAAAGGTCTCCGAAGCGTAAAAGCAAATCCCCTGacaaacacaaacacaaacacagacatcaccacaaaaacaaacacggcagacacaGAAGAGAACGAGATGAACCAAGTGAGGAAGACGAAGGACTGTGGATGCTGAACAAAAAAGACGAAGGTGACGATGGTGAGGGAAGTGATGCCGAGTTACACAGAAAACTATCCACAATTAATGAAGATAAACCAGGTGATGTAATCATTGATATGGAGCAAATACAGAATTCCTTGCTAGAGGAAGCTGAAGAAAATGAAGAAGGGAAAAGTGAGGAGAAGACGTGCGTGGACGGCGATGTGGAAGCCAAATGTTAA

Transcript

amic_s0046.g77.t1

CGTGAGAGGGCGCAGAACGTCAGCTCGTCACCCATATATTGTCTGATGGCGGATATCTGAGGTTCGAGAACCACGAGAAGCTTATGTGTTGAGATTTCATGTCTTCGTGGGTGGAAGCAATATCCCAGTAACCAACTTGAAATTGCTGTAACACTTTGATCGAAATGATGTCGATGGAATATCGGCCCAGAGAAGTATCAAAGATTGGTACAGAAGTAGCAGTTGATCCACATATGCTTGATGTTTATCACTCACAAGTTGAAGATGTAGATATTCAAGACCACCGTCAAGTTTACGTAGGGGTTCACATTCCCTTACGGCCTCGGAAACATCATCACCAAAAACATCACCATCGTAGAAGGCGCAGACCGAATGGTTCGATCGAATTCAAATCGGATGATTCAGATAATCAATCATCGTCACTACCAACTGATAAAGTGCGTTTTATTCTTGGTGGGGAAGAGAATGATGAATCTCACAAAATGTTTACGCAGTTGGCACATTATCAGAGTGAGAATGAGGAGTGGAGGCAAATGGCCCGTTGGCTTAAGTTTGAGGAAGCGGTTGAAGAAGGTGGAGATAGATGGAGTAAACCGCATGTTGGAACACTGTCACTCTACAGTTTGTTTGAGCTTAGAAGTTCTCTGTTACGAGGGACTGTTCTTTTGGACATGAATGCCACCAATGTAACTCAGATTTCTGATCTTGTGCTTGATGACATGGTAAACAAAAACCATTTGGATCAAGATTGTCGACAGAAGGCACGGGAGGTTCTTCTGAAAAAACACCGTCATCAGTGTAAAACCAAAAGTTCCAAGAAGGGGAAGACAAGCATTGGTAGCTTTGGCTCGTTTGCAAAGAAAGCTTCTTCAGCTGGGTTGAGTGAAATGCTCAAACGTTCAGACTCTACTCCAAAATCGGCAGAACAGCAGAAGTTAGAGGTAGTGAATGAAGTTGATCAGAAGGGAGAATTCCCTCACCTTCCGTCGGCTGTCGATTTGGTAGGGAAACAAAAAGACAGTAATGCCAAAGAAGAGATTGAAATGTCCAACGCGGAGGTCTGTGTAGAGTATGATAACAATTTTATGAAGAAAATTCCACCTGGGGCACAAGCATCAAATGTCCTCGTTGGAGAACTGGATTTCTTGAAGAAACCTGTGACAGCGTTTGTGCGCCTTGAGAATGCCTGTGTTCTTGGAAATATCACCGAAGTTCCTGTTCCCACTCGATTTATCTTTTTAATGTTGGGCCCTCCAGGCACACCCGGTCGATACCATGAAGTTGGCCGTGCCATTGCAACCTTGATGTCTGATGAGGTTTTTCATGAGGTTGCATACAAAGCACAGTGTCGTGAGGATTTGTTGGCTGGAATTGATGAATTTCTGATGCAGGTCACAGTTTTGCCTCCAGGTGAATGGGATCCATCCATCCGAATTGAACCTCCAGATGCTGTTCCCTCCCAGGATAAGCGTCTTGAGAGTGCTAAATCAGGAGGGAGTGGTGGAGGCGAAGAGCATGATCCAGCTGGTGACAGGGAGGAGCAGCTTGCCAAAACAGGAAGGTTGTGTGGAGGTCTCATTGCTGATATGAAGCGGCGAGCCCCATGGTACTGGAGTGACTTTAAGGATGCACTTAATCCTCAGTGCATTGCATCGATCATTTTTATTTACTTTGCATGTCTCACCCCAATTATTACATTTGGAGGTGTAATGGGCACAAAAACAGGCAAAAACATGGCTGCAATGGAGCAGATTCTAGCAGGTGGCATCGGTGGAGTCCTGTTCTCGTTGTTTGGTGGTCAGCCTCTTATTATCCTCGGAGCTACTGGTCCTATGTTGGTCTTTGAAGAGATCCTCTACACATTTTGTGAGGGTTTCGGCATTGACTACCTTCCATTCCGCTTGTGGATCGGAATTTGGACAATGCTGTACTGCTTTATCCTTGTTATAACAGATGCCAGTGCATTTGTCAGATACTTTACGCGTTTTACTGAGGAGTCCTTTGCTACCCTCATTGCTCTCATTTTCATAGTAGAGGGTTTCAAGAAGCTAGTACATGTTCTACATGACAGCCCAGTGAAAGTTGGAGATGCAAATGGCTACATAGACTGGAATGCGTGTCAATGTGTTCCTAAGGATATGGTAGACAATTTCACACGTTTCAACAGTAACACCAGTTTTTACCTTGATTATCCATTGGGAGATTGTGAGAGATATGGTGGCCATCTCGTGGGTCAAGCATGTCACAATAATGTATTTTTCCTGTCAGTTATCCTTTCTCTGGGAACCTTTGCACTTGCACTTTCATTGAAAGGATTCCGTACCAGTCCTTATTTCCCAACTAAGGTACGTGCAGTGGTCTCCGACTTTGCCATTCTGATTTCGATCATGGTCATGGTGGGAGTAGACGTTGCATTTGGTGTCAACACACCAAAGCTTGACATCCCATTGAAATTCCAGCCTACAGCTAGTGAGAAGAGAGGATGGATTATTCCACCACTTGGTAAGAACCCTGTATGGACCATTCCTGCTGCAGCTATTCCAGCGTTGCTTGCTACCATCTTGGTTTTTATGGATCAGCAGATCACAGCATTGATTGTGAACAGACGAGAGCATAAGCTAAAGAAAGGAGCTGGCTATCATCTGGATTTACTCCTTGTTGCCATTATCATTGGTATTTGTTCATTGCTTGGCTTGCCATGGGTGGTAGCAGCAACTGTACTTTCAGTTGGTCATGTGCAGAGCTTGTTTGTTGAATCGCAATGTACAGCTCCTGGTGAAAAAACGCAATTTCTTGGTGTAAGAGAGCAGCGTGTCACTGGCACCTTTATCTTCATCTTGATTGGTTTGACTGTTTTCATCGCACCAATTTTGAAGTATCTTCCTATGCCAGTTTTGTTTGGACTGTTCTTTTATATGGGATTTTCTGCACTGAAGGGATTGCAGTTTTTTGAGAGGCTGAAAATCATCTTCATGCCAGTCAAGCACCAGCCTGATCTGATGTATTTGCGTCAAGTTCCTCTCAATAGAATCCACATATTCACGTTTATCCAGCTGTTTTGTTTGGCTGTTCTGTGGGCCATTAAATCTACCCCAGCTGCTCTCATCTTTCCTGTCATGGTTTTAATGTTGGTCGCTGTGCGCAAGGTTATGGAAAAAATTTTCACCCTCTATGAACTTGAGGTGTTGGATGACTTGATGCCCGAGAACATTAAAAAGCAGAAGGCTGAGCTCGAAGCAAAAAAGAAGAAAGAGGAGAACTTCGAATATGATGACGAGGATAATGATGACGATTCAGAGGGCAAAAAGCACACACCTGGGAAAGAACTAAATGGCAGTGCTCATCAATCAGATACCCCCATGAACATCTCGGAAGAAATGTGCAAAACCTCTCTCTGGAAGACTTTTGTGAAAGATGGTTCCACCAAAAGGTCTCCGAAGCGTAAAAGCAAATCCCCTGacaaacacaaacacaaacacagacatcaccacaaaaacaaacacggcagacacaGAAGAGAACGAGATGAACCAAGTGAGGAAGACGAAGGACTGTGGATGCTGAACAAAAAAGACGAAGGTGACGATGGTGAGGGAAGTGATGCCGAGTTACACAGAAAACTATCCACAATTAATGAAGATAAACCAGGTGATGTAATCATTGATATGGAGCAAATACAGAATTCCTTGCTAGAGGAAGCTGAAGAAAATGAAGAAGGGAAAAGTGAGGAGAAGACGTGCGTGGACGGCGATGTGGAAGCCAAATGTTAAACAGTATTGTATTCCCATTACATTGGGAATAAATTTTGAATTCAATTTTAAATACCACAGGAAAACCAGCCCAATCTCTTCGTTTTAGTCATGTGGGATGTATGGTATTATTTTATATTTTATAATTTAACTTCACGCAGACATGTATTTTGTATAACTGAACCTCTTCATTTATTAGCTGGGCTTTGTTGCTGTTAGTTGTGGAAACAAGTAATCATTGCTCTCCTCTGTCTAAGCTTATAATGTTAGGATAAACAACTGGAAAGGAATACGATGATTTATAGTAAAAGTTGATTAGCAGTCAAAACTCGAAGGTTTAAGGAAATTACCGCAAAATGTCGAGGGCGGTATTGGAGTAGAAGAGAAACTTTATGCTGTTGTCAAGCAGATTTTCGTAAATAAAAAGACAAAGTTGAGAAGCGGTTTGCCATAGAAAATAATACTAACTGCTTTTAAACATGCGTTAACAATTGTTTATTTTCGTATTTTAAGAAGTTTGGGCGAAATAGGGGCCGGCCCTCTAATTAATGGTTCCTAGCTTAATTTATAAATTCAGCCCCTTAAAAAGGCGTTTGCCGGGGTTTTTCGATTAACAAGGCCTCAAATTTGGGAAAGTGATTTTCATTTTTGGTTTGATTCATCGGAAGCACATAATAAATGATAGGAACGACAAAGTAAAGTTTCATAGTTTATTAGGAGGAGTTGGTTTGAATTCGCGCACCATTTATATTGGTGCAATACAAAGCTGGGTATTGGAATTTCTTTTTCTTTTGTACAGGCGGTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32LP4	Sodium-driven chloride bicarbonate exchanger OS=Bos taurus OX=9913 GN=SLC4A10 PE=2 SV=1
Q6U841	Sodium-driven chloride bicarbonate exchanger OS=Homo sapiens OX=9606 GN=SLC4A10 PE=1 SV=1
Q80ZA5	Sodium-driven chloride bicarbonate exchanger OS=Rattus norvegicus OX=10116 GN=Slc4a10 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000860 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00955 all species →	HCO3_cotransp	HCO3- transporter family	Family	Interproscan
PF07565 all species →	Band_3_cyto	Band 3 cytoplasmic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003020 all species →	Family	Bicarbonate transporter, eukaryotic	Interproscan
IPR016152 all species →	Homologous_superfamily	Phosphotransferase/anion transporter	Interproscan
IPR011531 all species →	Domain	Bicarbonate transporter-like, transmembrane domain	Interproscan
IPR013769 all species →	Domain	Band 3 cytoplasmic domain	Interproscan
IPR003024 all species →	Family	Sodium bicarbonate cotransporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11453 all species →	ANION EXCHANGE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005452 all species →	Molecular Function	solute:inorganic anion antiporter activity	Interproscan
GO:0006820 all species →	Biological Process	monoatomic anion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008510 all species →	Molecular Function	sodium:bicarbonate symporter activity	Interproscan
GO:0015701 all species →	Biological Process	bicarbonate transport	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0050801 all species →	Biological Process	monoatomic ion homeostasis	Interproscan
GO:0051453 all species →	Biological Process	regulation of intracellular pH	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0008509 all species →	Molecular Function	monoatomic anion transmembrane transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13861	SLC4A10, NCBE; solute carrier family 4 (sodium bicarbonate transporter), member 10	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.