Gene detail

Detailed information of amic_s0047.g22.t1 in Acropora microphthalma

Genomic Location: sc0000047_pilon:249766...252183
NR annotation: XP_029192625.1, acyl-coenzyme A thioesterase 11-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0047.g22.t1

CTACGAAATAGAGGTCGGAAAAACCTTCTCTGATCAGTCCGCCAACCAAAACATCATTTACCTAGATTTCTCTAGCAACTTATCTAGCAGCAACCGCTGCTCTGTAATTGAGCCCGCACTTATTTGCAGTTGAAGACAACAACTTCGCAATAATTCTGGAACAACATCAAAGAAAGTAACAAGGACACGTACATTTAGCAGAAGAACAGAACCGAAGTTTGTAAAGACAAAGAAATCTGTAAGGATTGAAGAGCTGTCACCATGAATTGTTACAAAAACGTCACAGATGTGGAAATGAATCAGTTGGTCCTTCTGACGCACACAAACGAACGGGAGAAAAACTGCCTGAGCTGTGGACAGCTGCTGAAATGGATGGATACAGTTGCTTGTCTGTCTGCAGAGAAGCACGCTGGGTCATCATGCGTCACGGCGTGCATGGACGAGCTCTACTTTGAAACTGAAATTTTCGTTGGCCAGCTTGTTAACCTCACAGCTCGGGTAAATCGAGCATTCAACACGAGTATGGAAGTAGGCGTTTCTGTTCATGTGGAAGATTTGCGAAGCGGGGATAGAAAGAATGTCTGTCAGGCGTTTTTCACTTTTGTAGCTTTAGATGAAAATAATCACAAACAGCAACTGACGCCAGTTGTTCCGTTCACTGTTGAAGAGAAATCACAGTACGTGCTCGCCATGGAGAGAAGACGAATGCGAATGCAGTACTCTTTCAATCTCAAAGAGCTTTCACTGAAGCACGACAGTGAGATAGAAAGGGACTGGTTTAATAAAGGCGAATCAGGTGTCAATACAGACACTGCATTGGAAAGTGTCGAGCTTGTCCTTCCGCCTCATGCAAATCATCACCAAACAGCGTTTGGGGGTCAAGTGATGGCTTGGATAGCAACAGCTTGTACGATCGCGGCTGCACGCTTGTGCAGATCCACTCCGCTACTGCGAGCAGTCGACGAGTTGAGGTTTCGAGGTCCAATCAAAGTTGGAGACCGGGTGGTCATTAAAACCATGGTGAATAACACCTTCGAGCAGCACATGGAAGTAGGTTGCAGAGTCGAGGCTTACGCAATTGGAGGCGAGCTGCGACACGTCAATAGCGCTTTCTTGATTTTCATGGCTCCTGATGAAAACGGCGTCGCTAAGACTCTGGCACCCCTAGGAGCGAACACCGAGGATGGCAAGCGACGCGCTGTAGAGGCTGTGGCAAGAGAGCGACTGCGCTTTGAGCGAGAGCAGATCCGTAAGTCTGTTGGTCCTGTTATCGCAATTCCTTGGAGTCCTCGTATCAGTCATCTTCTGAATTACAATAATATAGAGACGCTGGTGAAGCTTTATGAACTGACAAAGTGGGAAGAAGTGCTATCTTCTTCAGGTGTCACGGTATTCAAGCGTGACACTGACAACTATCTTTGCGTGAAGGTAATTTTTCATTTACAGGTCCCCCCTGGTAAAGCCTTCGCGTTACTCAAGGATGAAAGGAGGAGAAAGGAATGGGATCCGCTGCCAGTTAAAGTAGAGGTAGCTGAAGTTGTCGATGATGATGACGAAATTGTCTACATAGTGTTGAAGAGCCCGGAGCGCAACGCAACGAAACCAGATGACTTTGTGTTATTAGTGTCACGCAGAGTCCCTTGTGATAAGAGAGACTACTTCACCATTGCTTATCGATCGGTCTTGTTAACAACAATACCCCCAGTTCCCGATTATAACCGGAAAGAGCATCTGTGTTCTGGAATGCTCATTTCCGAAACTGACGGAGACCCGCATAAAGCTACCATAACATACATTAATCAAACTACGCGAGAACTGGAGCCTTACGTTATGGGGGATCTTGATGGCTCGACCAAGTTTTTCGCCAAGCGTTTCAAGGAACTCGAGACTTGCATTCTGAAGGAATTGCCCAAGTAACACTTGGATGGATGCATCCGCTATTTTTGTAATGTACTCTCTCTAAGTCGGTTGTACATATATTTTCGTTCACGTAATGATAGCTTTGTTTCAAGACTCATTTTGTGAGAGCCAACAGTATAGGAGATCACCGTTGTGGATGTCTACGTGGTAAACCTCGGTGCACGAGGAGTATGGACGATGCGTGACAAACTTGTTCGCAGGACTTCTCCATTTGGTTGAGCTTTTTGGTAACGGAAAGGAGACACGTGATTCCCCTAAAAAGGCCTGGGGACGAGGAACACGTGAAGAAAACGTCTAGGGAGGAGTGAGACGTGCTCCACTAAAACTTGACCGTAAAGAGTCGACACATGCagcagtgtgcttatactttacttgtaataatccaaactggaagaggaggctcattcatgcgctgcgaatgtcgcaccttcccgacgaccacaaacttatcgctgattattttacctttaacacttgtgataaaacccgaaacaattt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VHQ9	Acyl-coenzyme A thioesterase 11 OS=Mus musculus OX=10090 GN=Acot11 PE=1 SV=1
Q8WXI4	Acyl-coenzyme A thioesterase 11 OS=Homo sapiens OX=9606 GN=ACOT11 PE=1 SV=1
Q9DBK0	Acetyl-coenzyme A thioesterase OS=Mus musculus OX=10090 GN=Acot12 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008505 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03061 all species →	4HBT	Thioesterase superfamily	Domain	Interproscan
PF01852 all species →	START	START domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029069 all species →	Homologous_superfamily	HotDog domain superfamily	Interproscan
IPR023393 all species →	Homologous_superfamily	START-like domain superfamily	Interproscan
IPR033120 all species →	Domain	Hotdog acyl-CoA thioesterase (ACOT)-type domain	Interproscan
IPR040170 all species →	Family	Cytosolic acyl coenzyme A thioester hydrolase	Interproscan
IPR006683 all species →	Domain	Thioesterase domain	Interproscan
IPR002913 all species →	Domain	START domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11049 all species →	ACYL COENZYME A THIOESTER HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006637 all species →	Biological Process	acyl-CoA metabolic process	Interproscan
GO:0016790 all species →	Molecular Function	thiolester hydrolase activity	Interproscan
GO:0047617 all species →	Molecular Function	fatty acyl-CoA hydrolase activity	Interproscan
GO:0070062 all species →	Cellular Component	extracellular exosome	Interproscan
GO:0008289 all species →	Molecular Function	lipid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12417	ACOT11; acyl-CoA thioesteraes 11	EC:3.1.2.-	Lipid biosynthesis proteins	ko01004	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.