Gene detail

Detailed information of amic_s0047.g24.t2 in Acropora microphthalma

Genomic Location: sc0000047_pilon:259486...285756
NR annotation: XP_044172321.1, helicase SKI2W-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0047.g24.t2

ATGTCCATCTTGCGACAGCCAGGGCCACTGTCGGCTTCAGTCAGGGGAGATTCTACCAATTACCCCTTCTTGCCAGGTGGAATGGACACTCAAGAAACAACAAAACCAGCCCTTGTATTTGATGGAGCATTAAACTTTGAGAACAATCTTTTCTCTCAACCACCAGGTTTTACCAGAGTGGTCTCATTTAATGACTCAAAAGCAGAGGAGGAAGTTAAAAGAGAAAAAGAAGACAATGAAGAAAAAGAAGAAAAAGGGAAAGATTCAAGTACATCACCACCTCAAGTTCTTGCTATGGCCGATATCATGGCTGGAACAACACTTGAAGATCTCGAGTACAGTGACGAAGAAAGTGAAGTAGACTCGGATGAAGATTATGTAAACCAGACCTCTGAAAAAGAAGAATATAATGTTGATCAGACAGATCCTGCAGAGGGAAATACAGAAGACAGTCTTGAAAATGTTTTAGTGAAGGGCTCAACTGTCAATAAATTCACGTCAGCGGCAACTGTTGCAGAAAAACCAGTGAAAGAGCAATGGGCTGTCATGATTAATGTGACAGAACCAGTGAAGGATTTTCACAAACGAGTTCCTGATATGGCTTACAAGTGGCCTTTCGAGTTGGACACCTTTCAAAAACAGGCTGTCCTCTGTTTGGAAAACAACGAGTGTGTGTTTGTTGCGGCGCATACGTCTGCTGGGAAGACAGTGGTGGCTGAGTATGCTGTTGCCTTGGCTATCAAACATATGACGAAGACAGTGTATACCTCGCCCATCAAAGCGTTATCCAACCAAAAGTTTCGCGAATTCAAGGACACTTTTGAGGATGTGGGTTTGCTAACTGGTGATGTCCAAATCAGACCTGAAGCGTCTTGTCTTATCATGACGACTGAAATCCTGCGTTCCATGTTGTACAATGGCTCTGACACAATCAGAGATGTGGAGTGGGTGATTTTTGATGAAGTACACTACATCAACGATGAAGAGAGGGGTGTCGTCTGGGAAGAGGTGCTGATCATGTTACCGGCTCAGGTCAAAATTATATTACTGTCGGCTACAGTCCCAAACACTCTGGAGTTTGCAGACTGGATTGGTCGCACCAAGAAAAAAAAGATCTACGTCATCAGCACGCCGAAGCGACCAGTTCCTCTCCAGTACTTCCTGTACACGGGAAACAGCAACAAAACAAGTAGCGAACTGTTTATGATCGTAGACGCCAACAGCAAGTTCCTGATGCGCGGTTACGATGCTGCAGTAGAGGCGAAAAAAGTGCGGGAAGGAAAGGGAAAGGGCGCGTTTGGTTCCAAGACTCATCAACCAGTCAACGTGAGGGAGGAGCGCAACGTTTGGCTTTCCTTGATTGAGATGCTGCGTAAGAAAGAAAATATACCTGTGGTGGCTTTTACCTTCTCAAGGAAGAGATGCGACGAAAATGCGGATCAACTAAGCAGCCTTGATCTCACCACTTCCACGGAGAAGAGCTCAATTCACGTGTTCACTCAGAAGTGTGTTTCAAGACTCAAAGGAAGTGATAGAAAGCTACCGCAAGTTTCCAGGATAAGGGAGCTCCTTAAACGCGGCCTCGGTGTCCATCATAGTGGAGTATTGCCCATAATAAAAGAGATGGTGGAAATGTTGTTTGGACGAGGATTGGTAAAGATTCTGTTTGCTACAGAGACGTTTGCTATGGGAGTCAACATGCCCGCCAGGACAGTGGTGTTTGATTCAATAAGGAAACATGATGGAACTGTCTTTCGAAATCTTTTATCCGGAGAGTACATCCAAATGGCTGGCCGCGCGGGACGAAGAGGACTGGACCCGACCGGAACTGTGATTCTACTTTGCAAAGCAAATGTCCCTCTGATGGCTGATCTACACAAAATGATGCTGGGCAGACCAACACAATTGGTTTCCAGATTTCGTCTCACTTACTCCATGATCCTGAATCTTTTGCGAGTTGAGGAGTTGCGCGTGGAAGACATGATGAAAAGAAGTTTTGCCGAGTTTCACATGCAAAAAGATGCACAAGAGAGAAAACGCGAAATGGAAGAATTAGAACAAAAGCTGCAAAATGTCAAGGAACTGGACTGTACGTTTTGCTCGGAGGATTTGAAATTATACTTCAAAGGTTGCAGAGAGCTGTCGGAATTAACACGAATTGTTCAGGCTGCGATTCTCTCATCTGCTCAGGGTCAGCGGGCTCTCTCTCCAGGGCGTGTTGTCACCATAAATACTTCTGAACACAGAAACGCGCTCGCTGTCATATTGCAAGCGGAAAATCCCCCGAACCAGGGTTACCCAACCATGCATTCTCGGCCAGTTTGCAGTCCCAAAGAAAGACACTTCCTCGTCCTCGTCATATGTGACGCACTAGAGCAAACACCTGGTTCAAGTGACGAAGATTCAGTTTCCAAGCCAGGCGTGCCTTCAGCCAGCATGGCCGATGAAGTACAACCGTTTCTAAAAACGAAGTTATTTTTACCTGAAAGACGATGTTCTCATAGTGTCACAAGAGTGAATGGAACTGAAATCAGCGCTATTTCTGTTCGCCAACTGAAGCTGGACACAAGCAAAATCATCGATGATCACAAGAAAAGAATGCTGCCAAGATTCAGAAACGATCCACCGGGAAGAACGACAGTAACAGCTGAACAAGAACTGCTGCGATTGTCCGAGGCAAATCCAGAGGGACTGGACAAAATGGATCCGGTCAAAGATTTCAACATCCGAGATATCGACATGGTGACAACAGTCGCACGAAAGCAAAGCCTTGAAGAGAGTATAACCAGCTTCAAATGTTTAGACTGTCCTAAGTTTACGGGACATTTTGAAGCTATTGCGCACCAGACGAGGCTCCGTGACCACGTGACTTCGCTCAGATATTTGTTGTCGGATGAAAGTCTGCAACACACAGAGGAGCTTCGGCAGAGAATTCAGGTGCTACAGAAATTGCGTTATGTGGATGCTAACAATGCTGTGAAGCTTAAAGGAAGAGTAGCATGTGAGATAAACAACCACGAACTCATTATTACAGAGCTTGTGTTCGAAAATGCCTTCACCGATCTACATCCCACAGAAATTGTTGCTTTGTTGTCCTGTTTCGTCTTCCAGCAGCGTCGTTGCAGCGAACCAAAGCTAACAAAGACGCTAGAGGAGGGCAAGAAGTGTATCTTAACCATGGCTGAGGAGATCGCCTGGCTTCAGTCAGAATGCGGTCTTGTCACATCCGTTGAAGAGTTTAAAGAGCAATACAATTTTGGTTTGGTTGAAGCAGTGTTTGAGTGGGCGCGCGGTATGCCTTTCTCCGAAATCACCAATCTAACAGATGTCCAGGAAGGAATTATCGTTCGATGTATTCAGCGATTGGACGAGACGTGTCGTGACGTCAGGAATGCTGCTCGTGTTATTGGAGATCCAAAACTTGGCGAGAAGATGGAAGAAGCTTCTGCCATGATTAAAAGAGATATAGTATTCGCTGCGAGTCTGTACACACAGTAA

Transcript

amic_s0047.g24.t2

GATAACTTTAATAACACAGAAGAGAACGTCAAGAAAGATAAGCTCAAGAGGAATGTGATCCGCTGGAATATGATTTCGATCTTCTAGAAGTTGGATGCACTGGAATTATTGAGGTTATTCCACCGTCAATCAACAAAACTTCAAAGAAAGAACTGGGCCCTTTAACAACACTACCTTCAGGACTCCCACCTTTATTTCCTCCTGATTTGAAAACAGACTTAGAGAAATATCTCCTGGATCCCACGTCTTTGCCAATTCATGACTTTCATAAGACGCAAAGGTTTTGGCCTCGGGAAAGAGATTCAGAGAGTCTGTTCTATGCAGATGTCTGTCCAGTGCCAACAACGTTAAAAGTGGAGAGAAATCCAACAACTGGAGAGCTTCTTGGTTATAATGAGGTCATTTTGAAAGATACTGGTTCCACAGCCAAGAATTCTATGTCCATCTTGCGACAGCCAGGGCCACTGTCGGCTTCAGTCAGGGGAGATTCTACCAATTACCCCTTCTTGCCAGGTGGAATGGACACTCAAGAAACAACAAAACCAGCCCTTGTATTTGATGGAGCATTAAACTTTGAGAACAATCTTTTCTCTCAACCACCAGGTTTTACCAGAGTGGTCTCATTTAATGACTCAAAAGCAGAGGAGGAAGTTAAAAGAGAAAAAGAAGACAATGAAGAAAAAGAAGAAAAAGGGAAAGATTCAAGTACATCACCACCTCAAGTTCTTGCTATGGCCGATATCATGGCTGGAACAACACTTGAAGATCTCGAGTACAGTGACGAAGAAAGTGAAGTAGACTCGGATGAAGATTATGTAAACCAGACCTCTGAAAAAGAAGAATATAATGTTGATCAGACAGATCCTGCAGAGGGAAATACAGAAGACAGTCTTGAAAATGTTTTAGTGAAGGGCTCAACTGTCAATAAATTCACGTCAGCGGCAACTGTTGCAGAAAAACCAGTGAAAGAGCAATGGGCTGTCATGATTAATGTGACAGAACCAGTGAAGGATTTTCACAAACGAGTTCCTGATATGGCTTACAAGTGGCCTTTCGAGTTGGACACCTTTCAAAAACAGGCTGTCCTCTGTTTGGAAAACAACGAGTGTGTGTTTGTTGCGGCGCATACGTCTGCTGGGAAGACAGTGGTGGCTGAGTATGCTGTTGCCTTGGCTATCAAACATATGACGAAGACAGTGTATACCTCGCCCATCAAAGCGTTATCCAACCAAAAGTTTCGCGAATTCAAGGACACTTTTGAGGATGTGGGTTTGCTAACTGGTGATGTCCAAATCAGACCTGAAGCGTCTTGTCTTATCATGACGACTGAAATCCTGCGTTCCATGTTGTACAATGGCTCTGACACAATCAGAGATGTGGAGTGGGTGATTTTTGATGAAGTACACTACATCAACGATGAAGAGAGGGGTGTCGTCTGGGAAGAGGTGCTGATCATGTTACCGGCTCAGGTCAAAATTATATTACTGTCGGCTACAGTCCCAAACACTCTGGAGTTTGCAGACTGGATTGGTCGCACCAAGAAAAAAAAGATCTACGTCATCAGCACGCCGAAGCGACCAGTTCCTCTCCAGTACTTCCTGTACACGGGAAACAGCAACAAAACAAGTAGCGAACTGTTTATGATCGTAGACGCCAACAGCAAGTTCCTGATGCGCGGTTACGATGCTGCAGTAGAGGCGAAAAAAGTGCGGGAAGGAAAGGGAAAGGGCGCGTTTGGTTCCAAGACTCATCAACCAGTCAACGTGAGGGAGGAGCGCAACGTTTGGCTTTCCTTGATTGAGATGCTGCGTAAGAAAGAAAATATACCTGTGGTGGCTTTTACCTTCTCAAGGAAGAGATGCGACGAAAATGCGGATCAACTAAGCAGCCTTGATCTCACCACTTCCACGGAGAAGAGCTCAATTCACGTGTTCACTCAGAAGTGTGTTTCAAGACTCAAAGGAAGTGATAGAAAGCTACCGCAAGTTTCCAGGATAAGGGAGCTCCTTAAACGCGGCCTCGGTGTCCATCATAGTGGAGTATTGCCCATAATAAAAGAGATGGTGGAAATGTTGTTTGGACGAGGATTGGTAAAGATTCTGTTTGCTACAGAGACGTTTGCTATGGGAGTCAACATGCCCGCCAGGACAGTGGTGTTTGATTCAATAAGGAAACATGATGGAACTGTCTTTCGAAATCTTTTATCCGGAGAGTACATCCAAATGGCTGGCCGCGCGGGACGAAGAGGACTGGACCCGACCGGAACTGTGATTCTACTTTGCAAAGCAAATGTCCCTCTGATGGCTGATCTACACAAAATGATGCTGGGCAGACCAACACAATTGGTTTCCAGATTTCGTCTCACTTACTCCATGATCCTGAATCTTTTGCGAGTTGAGGAGTTGCGCGTGGAAGACATGATGAAAAGAAGTTTTGCCGAGTTTCACATGCAAAAAGATGCACAAGAGAGAAAACGCGAAATGGAAGAATTAGAACAAAAGCTGCAAAATGTCAAGGAACTGGACTGTACGTTTTGCTCGGAGGATTTGAAATTATACTTCAAAGGTTGCAGAGAGCTGTCGGAATTAACACGAATTGTTCAGGCTGCGATTCTCTCATCTGCTCAGGGTCAGCGGGCTCTCTCTCCAGGGCGTGTTGTCACCATAAATACTTCTGAACACAGAAACGCGCTCGCTGTCATATTGCAAGCGGAAAATCCCCCGAACCAGGGTTACCCAACCATGCATTCTCGGCCAGTTTGCAGTCCCAAAGAAAGACACTTCCTCGTCCTCGTCATATGTGACGCACTAGAGCAAACACCTGGTTCAAGTGACGAAGATTCAGTTTCCAAGCCAGGCGTGCCTTCAGCCAGCATGGCCGATGAAGTACAACCGTTTCTAAAAACGAAGTTATTTTTACCTGAAAGACGATGTTCTCATAGTGTCACAAGAGTGAATGGAACTGAAATCAGCGCTATTTCTGTTCGCCAACTGAAGCTGGACACAAGCAAAATCATCGATGATCACAAGAAAAGAATGCTGCCAAGATTCAGAAACGATCCACCGGGAAGAACGACAGTAACAGCTGAACAAGAACTGCTGCGATTGTCCGAGGCAAATCCAGAGGGACTGGACAAAATGGATCCGGTCAAAGATTTCAACATCCGAGATATCGACATGGTGACAACAGTCGCACGAAAGCAAAGCCTTGAAGAGAGTATAACCAGCTTCAAATGTTTAGACTGTCCTAAGTTTACGGGACATTTTGAAGCTATTGCGCACCAGACGAGGCTCCGTGACCACGTGACTTCGCTCAGATATTTGTTGTCGGATGAAAGTCTGCAACACACAGAGGAGCTTCGGCAGAGAATTCAGGTGCTACAGAAATTGCGTTATGTGGATGCTAACAATGCTGTGAAGCTTAAAGGAAGAGTAGCATGTGAGATAAACAACCACGAACTCATTATTACAGAGCTTGTGTTCGAAAATGCCTTCACCGATCTACATCCCACAGAAATTGTTGCTTTGTTGTCCTGTTTCGTCTTCCAGCAGCGTCGTTGCAGCGAACCAAAGCTAACAAAGACGCTAGAGGAGGGCAAGAAGTGTATCTTAACCATGGCTGAGGAGATCGCCTGGCTTCAGTCAGAATGCGGTCTTGTCACATCCGTTGAAGAGTTTAAAGAGCAATACAATTTTGGTTTGGTTGAAGCAGTGTTTGAGTGGGCGCGCGGTATGCCTTTCTCCGAAATCACCAATCTAACAGATGTCCAGGAAGGAATTATCGTTCGATGTATTCAGCGATTGGACGAGACGTGTCGTGACGTCAGGAATGCTGCTCGTGTTATTGGAGATCCAAAACTTGGCGAGAAGATGGAAGAAGCTTCTGCCATGATTAAAAGAGATATAGTATTCGCTGCGAGTCTGTACACACAGTAAAACTTCATTCAACACATAGTGCAGGACATGTCTGTACAAGGCTATGGGTATACTGCGGAACACAGCAAAAACATACTGACTGGAGGTCAAGAAGCTAACGTACCATCTTGAGCGACACAGAGACCATTGTCTGGAACTGCGGAAATGAACTAGTTCAAACAGAATTGAATTCGGATGTCTGCAATGATTGGATGTGATCTTTTTAGGTCGGTTTTTTGTTTTAGCGAATGGGGACTGCATTTACTAGTCTATTTTAGAGTCATTGGGTCCAACATTTTTAGGAGAACGCTTTCTTTTATCGTCTTTTTGAGAGGGTTCTCACCGTTTTCCCCAAGAGTACAATATTCGATGCCATTTGTTTTCAAGGTTTCGATGGACTGGCTGGCATTTATCCGCAAATTTCATGGTCTAAATGGCTAGCCTTTTTAACCACAGGCATCCCGTCAATAACATACGCTCGTTCTACGCGTGCGTGGTCGACCGAAATATTCCTCGTAAAGTTGGATCAATTTCCGACCATTTTTCCAAAGTATCTTTTACCAATGTGATTGATACTAGTCATGAAAAGATAAGAAAGCTGTGCGGTAATGTGTCTTCTAGGAACAGATGCTGCAATTTGATCAAATACTTAGCACTGATTTATGATAATGTATAGTGCATATTTTATTTAAACAAAAAAAGCCGGAACAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NZR5	Superkiller complex protein 2 OS=Mus musculus OX=10090 GN=Skic2 PE=2 SV=1
Q15477	Superkiller complex protein 2 OS=Homo sapiens OX=9606 GN=SKIC2 PE=1 SV=3
F4JAA5	DExH-box ATP-dependent RNA helicase DExH11 OS=Arabidopsis thaliana OX=3702 GN=SKI2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001225 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17911 all species →	Ski2_N	Ski2 N-terminal region	Domain	Interproscan
PF13234 all species →	MTR4_beta-barrel	Mtr4-like, beta-barrel domain	Domain	Interproscan
PF21408 all species →	MTR4-like_stalk	Exosome RNA helicase MTR4-like, stalk	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF08148 all species →	DSHCT	DSHCT (NUC185) domain	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR012961 all species →	Domain	ATP-dependent RNA helicase Ski2/MTR4, C-terminal	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR040801 all species →	Domain	Ski2, N-terminal domain	Interproscan
IPR016438 all species →	Family	ATP-dependent RNA helicase SKI2-like	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR025696 all species →	Domain	Exosome RNA helicase MTR4-like, beta-barrel domain	Interproscan
IPR050699 all species →	Family	RNA/DNA Helicase	Interproscan
IPR048392 all species →	Domain	Exosome RNA helicase MTR4-like, stalk	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12131 all species →	ATP-DEPENDENT RNA AND DNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0006401 all species →	Biological Process	RNA catabolic process	Interproscan
GO:0055087 all species →	Cellular Component	Ski complex	Interproscan
GO:0070478 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12599	SKI2, SKIV2L; antiviral helicase SKI2	EC:5.6.2.6	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.