Gene detail

Detailed information of amic_s0047.g32.t1 in Acropora microphthalma

Genomic Location: sc0000047_pilon:365359...373585
NR annotation: XP_015780952.1, PREDICTED: high-affinity choline transporter 1-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0047.g32.t1

TGGTAAGAGGAAGTGCGTGATCGTTCTCTTTTTAGGGAAGATTGACACTGGTTATGGCAGAAATCAATATACCGGGCCTCATAGCGATCATTGTCTTTTATCTCGTGATTGTCGGAGTTGGAATATGGGCGGCTCGCCGCCGCAAGAACAACGAAGAAGAGACCATGTTAGCTGGAAGAAGTATTGGAGGAATCATTGGGACTTTTACGATGACAGCAACATGGGTTGGTGGTGGATACATCAATGGGACGGCAGAAGCTGTGTTTGACAAGGACCGTGGACTTGTTTGGGCCCAGGCTCCCTGGGGTTACTCAGTAAGTTTGGCAGTTGGTGGACTCGCCTTTGCCAAGATCATGCGCAATAGAGAGTACTTCACAATGATCGATCCTTTTCAAGAGCGGTACGGTCCACGCATGGGTGGCCTGTTGTACATTCCTGCTTTGTTGGGTGATATATTTTGGTCAGCGGCTATCCTGAATGCCCTCGGTGCAACCATCAGCGTCATAATCAACGTGCATCGTGTTCCTTCTATCATATCTTCAGCGTGTGTTGCTGTGTTTTACACCCTTATTGGTGGACTGTATTCAGTGACTTACACCGACATTATTCAACTTTCCTGCATCTTCATTGGATTGTGGATAAGTGTTCCATTTGCCATGACCAATGAAGCAGTCAGCAGCATATCAGTTACTTCCGGCGCGGAATGGACTGGGGAAATCCAGACCAAACTAATTGGAGTATGGTTAGACTACGGACTATTGCTGATATTTGGAGGAATTCCGTGGCAAGCCTATTTCCAAAGAGTACTGTCATGTAAGACAGCGCGAAAGGCTCAGGGACTCTCCTTTGCAGCTTCGGTTGGATGCGTAATTCTGGCAATACCAGCCGTTCTCGTTGGAGCAATAGGGGCCTCGACAGATTGGAAGAAAACGGCCTTTTTCACAGATGACTCCACTAATGGCACCGTAACCATCGAGAAAACTATGGTTCTACCCATGGTCCTTCAGTATCTCTGTCCGCCTGTTGTCTCGTTCATTGGCCTCGGTGCTGTGTCTGCTGCTGTCATGTCGTCTGCTGACTCCAGCATTCTGTCCGCGTCCACAATCTGTGCGAGGAACATATACAAGCTCGTGTTCAGACAAAAGGCTTCTGAAAAGGAAGTTATCTGGGTGATGCGTATCTCCATGTTCATTGTTGGCGCAGCCGCCACAGCGATAGCACTATCGGTGGATTCAATTTACACTTTGTTCGCGCTTTGCAGTGATTTGGTTTACGTCATCCTGTTCCCGCAACTCTGTTGCGTCATCCACCTGCCTGATGCTAACATTTATGGCTCTATTATGGGTTATATCATGGGGCTGATACTTCGCGTAGGTGGAGGCGAATCAGCAATTGGCTTCCCGGCCTTCATCAAATATCCTTATTATGATGAAAAAAATAAGAAGCAACTGTTTCCGTTTAAGACCTTGTCAATGTTGATTTCTTTAATAACAATCGTCTCAGTATCATATCTGACAAAACATTTGTTCACAAAAGGAATTCTACCAGAAAAGTATGATTTTCTGCACTATTTCAAACGATACGATATAGATAAAAAAGATGCCGGGGAAAATGAAAATCAAGAGATGCAGATTCATGAGAAATACGAACGCAAATTGTAGACAGTTTGGGACAAGCAAACACTAGAGAGGATTTTACTCTCTTTGAAGGCTAAGGCAGATGTATTTTATTATACAATGACTGTGGTGGGAAATGGATCGGTAATATATTACCCATTCATGGAGGAGTTTATTTCAGATATTTTGATATAAACGGAGTGATTATCAATTTTTAATGTAAGATTTAAAAAAAACCTCGCCATTAGGGTAAGCAACTTCCGATTAGTGATGTCTAAAAGACTGAAGGATCGTGCATTCTTATAAAATGGTCAACACTACTGCTGTCGATGCTTAAAGCTCAGCTAAAAAATACAAAGTGGTTCTTCCCACAAGAAAAAGATTTCGCATTTTTCTTTGTTTTTACATTGTATCAAAGTTCTTGTCGTTGTTGCATGAGATTCTCGATGTGTACAACCaccacatcgacagtgagctttattagcatgactataacaacacagcattgtaaaagcgtaaaaaacatgataattacag

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9VE46	High-affinity choline transporter 1 OS=Drosophila melanogaster OX=7227 GN=ChT PE=2 SV=2
Q8UWF0	High-affinity choline transporter 1 OS=Torpedo marmorata OX=7788 GN=CHT1 PE=2 SV=1
Q9GZV3	High affinity choline transporter 1 OS=Homo sapiens OX=9606 GN=SLC5A7 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001039 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00474 all species →	SSF	Sodium:solute symporter family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038377 all species →	Homologous_superfamily	Sodium/glucose symporter superfamily	Interproscan
IPR052244 all species →	Family	High-affinity choline transporter	Interproscan
IPR001734 all species →	Family	Sodium/solute symporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45897 all species →	HIGH-AFFINITY CHOLINE TRANSPORTER 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005307 all species →	Molecular Function	choline:sodium symporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008292 all species →	Biological Process	acetylcholine biosynthetic process	Interproscan
GO:0015871 all species →	Biological Process	choline transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14387	SLC5A7, CHT1; solute carrier family 5 (high affinity choline transporter), member 7	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.