Detailed information of amic_s0047.g5.t1 in Acropora microphthalma

Genomic Location: sc0000047_pilon:37695...48165
NR annotation: XP_044177666.1, zinc finger CCCH-type with G patch domain-containing protein-like isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A7SBN6Zinc finger CCCH-type with G patch domain-containing protein OS=Nematostella vectensis OX=45351 GN=v1g244155 PE=3 SV=1
Q7SXW2Zinc finger CCCH-type with G patch domain-containing protein OS=Danio rerio OX=7955 GN=zgpat PE=2 SV=1
C0HAV3Zinc finger CCCH-type with G patch domain-containing protein OS=Salmo salar OX=8030 GN=zgpat PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005907 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01585
all species →		G-patchG-patch domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000467
all species →		DomainG-patch domainInterproscan
IPR002999
all species →		DomainTudor domainInterproscan
IPR000571
all species →		DomainZinc finger, CCCH-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46297
all species →		ZINC FINGER CCCH-TYPE WITH G PATCH DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0000122
all species →		Biological Processnegative regulation of transcription by RNA polymerase IIInterproscan
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0001227
all species →		Molecular FunctionDNA-binding transcription repressor activity, RNA polymerase II-specificInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0046872
all species →		Molecular Functionmetal ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0047.g5.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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