Detailed information of amic_s0047.g7.t3 in Acropora microphthalma

Genomic Location: sc0000047_pilon:67487...88915
NR annotation: XP_029192616.2, laminin subunit gamma-1-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P02468Laminin subunit gamma-1 OS=Mus musculus OX=10090 GN=Lamc1 PE=1 SV=2
A0JP86Laminin subunit gamma-1 OS=Xenopus tropicalis OX=8364 GN=lamc1 PE=2 SV=1
Q1LVF0Laminin subunit gamma-1 OS=Danio rerio OX=7955 GN=lamc1 PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001810 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00055
all species →		Laminin_NLaminin N-terminal (Domain VI)DomainInterproscan
PF00053
all species →		Laminin_EGFLaminin EGF domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002049
all species →		DomainLaminin-type EGF domainInterproscan
IPR008211
all species →		DomainLaminin, N-terminalInterproscan
IPR050440
all species →		FamilyLaminin/Netrin Extracellular MatrixInterproscan
IPR008979
all species →		Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10574
all species →		NETRIN/LAMININ-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0009887
all species →		Biological Processanimal organ morphogenesisInterproscan
GO:0009888
all species →		Biological Processtissue developmentInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K05635LAMC1; laminin, gamma 1-Prion diseaseko05020deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP