Gene detail

Detailed information of amic_s0048.g36.t2 in Acropora microphthalma

Genomic Location: sc0000048_pilon:647179...700059
NR annotation: XP_029193178.2, LOW QUALITY PROTEIN: cartilage oligomeric matrix protein-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0048.g36.t2

ATGACTCTTATCTTCAAGCGGCCCGTGGGAGATTTGATTGATGGACCAGAATGCGGCACAGGTCTTGGAGCATTGAGAGCTCATCAAGAACCCCAAGGAGTAACTGATACTGGCACCTTTCCACACGAGGTCGCTTACGATTTGATTGGTCTAATCAAGGATCTTCGATACGATCTTTCCGTGCAGGTTGCTGAAACCAAGTACCTGCGAGGATTGGTAGAAAATTGCCAAATGTGCAGAGTGCACGATTTCTGTCGCTTCAAGCCTTGTTTTCCCGGCGTACCTTGCTTCAACGATCCCGCGTCTCTTCAGGGATTTGAGTGCGGTGAATGTCCATTGGGAATGGTTGGAAATGGTGTCAACTGCAGTGACGTCGATGAGTGCAAGCTTGTCGACCCTTGTTATGCAAGAGTCACGTGCCAGAATAGAAGTCCCGGTTATTGGTGTCCACCATGCCCTGCGGGTTATTCTGGCAAGGAGGTTCATGGGATTGGATTGTATTCTGCACGGACCAATAAGCAGGTTTGCACAGATATTGACGAATGTGCTGACAGTCCCTGCGCAAAAGAAGCAAAATGCACCAACACAAATGGATCATATGAGTGTGGAAACTGTCCTCCTGGTTACACCGGCGATCCCACAATTTCATGTTACTACTTAAACTACTGTGACCCTGAAAACCCCAAGAGTAATCCTTGCAGCCAGTACGCTAAATGCATTCGATTGGATAGTGGCCGAGATTTCATGTGTCAGTGTCGCACGAACTACGCTGGCAGTGGCCTTCTTTGTGCCGAAGACTCCGACAAAGATGGTTTTCCTGATGTCGAGCTTAACTGTTCTGATAAAGGCTGTCGTAAGGACAACTGTGTGTATGTTAGTAACCCCGATCAATTAGATGCCGACGGTGATGACATTGGAGACGTTTGTGACGAAGATATGGATGGCGATGGTATTAGGAACGAGGTGGACAATTGCGCCCGTATTGCGAATGCAGCACAGTATAACAATGATGGAGATCTGTTTGGAAATGATTGCGACAACTGCCCTTATGTTAGCAACTCGTATCAAAGAGATAGCGACGGAGATGGGATCGGAGACTCTTGCGACAGAGACATCGATGGAGACGGTGTAATAAACTCCTTTGACAACTGTCCAAAGATCTATAATCCGCTACAAGAGGACCGCGATACTGACTCAGTTGGCGATGTTTGCGATAATTGTCCTTCTGTTCGCAACCGCAGACAATATGACAGAGACGATGACAGTCTCGGAGATTCCTGTGATACAGACCGCGATGACGATAATGACGGCGTTGATGACATGGTGGATAACTGTAGAGGAGTGGTCAATCCTGACCAAGTAGATAACGATCAAGATGAAAAAGGTGATGCATGTGATGACGATGACGACGACGATGGCGTTGTGGACTTGAACGATAACTGTCAACTCGTGCCCAATCCTACTCAACGAGATTTGAACGGCAATGGAATAGGGGACCCTTGTGACGGCGATTTTGATAACGACAAAGTCCCGGATGCTGAGGACCCATGCCCAGTGGACCATCATTGTACGCGTACAGATTTCACCAGAATGATCACTGTCGAACTGAATCCGTATGAATCCCCGAGCACACCGCCAGTTTGGGTGGTGGATTCTTCGGGAACCCAAGTAACAGAAACAGCAAACAGTGACCCCGCTATTGCAGTCAGTCAAACGCGGTTCGGTGGTGTGGATTTTTCGGGAACTTTAGATGTGTCAACGCAACACGATGATGATTTCGTGGGAATCGTGTTCAGTTACCAAAGCAACAAACGGTTCTACCTTGTTTCGTGGAAACAGAGAGACCAAGTTCACTGGAACGTCAAACCCTTCAGAGCAGAGGCTGTGAAAGGAATTCAGATTAAGCTTGTCAACTCTGAAACAGGGCCAGGGAGTGACCTCAGACATGCATTATGGCATTCGGGTGATGTTAAAGGACAAACCAAAGAACTCTGGAGGGACTCGAAGGAGGAAGGCTGGGAGGACAAAACAGAATACTCCTGGAAATTAATTCACAGACCGACAATTGGATTGATAAGGCTTAAAATTCTTTCCAAAGGGGAAGTTGTGGTAGACACGGGCTATCTTGTCGACAGGACTCTCAAAGGTGGCAGAGTTGGACTGTACGTGTTTTCACAATCTGATGTGACCTGGAAGCACCTCTCTTACAAGGCTAACGACGTTACCCCGGATGACTATCGAGCTGAAATCCCTAGCAACTGA

Transcript

amic_s0048.g36.t2

GGGGCCTTTGGAAAGCTTATGCGACGCACTGAGGAAAGTGAAATGCTCGCAACCGAGAAGCAATGACAATCTTGGATCGTATCCTGACAGACAAGAGCGACTGAATTGATATAAGCTAAGCAGCCCTATCTCGACGGAATTTAGTGGCCAATCTTGTGAACTGGGAAGGATTTTTCTGTGAAACCAGCTCCTGTGGCGATTTTCTGATTCATTATTGAATACTTGTCCTCGACAAGTTGCAAGATAAGACAAGCATTCCAGTTTTGCTGAAGGCCTAAATACTGCTATCGATCAAAGTTTCATTTACTAGAAATAATGAGTAACAACAAACTACTTTGGCTACTTCTCTGTGTGCTATGTTGCACAACAGCAGACGCCTTAGAAATCGATTTGCTGACTCCCATCTCTGAGTCTCCAGAAGATTTGAACGTGAAGCGAGTGATAAATTCCAGGGTTTTACCTGGATATATGTTTGGCCGATCGGTAAAAAAAATCATAGCCTCGGAGGAACTCCTTCAAGAGACTATTATGAATATCGAATCAAACGGTGAGTTTATCATATACGCTTCCCTCAGGCTTGTAGCTTCACGGTCGGGAGCATTGTTCTCCATTTCACACAGTCAAAGAAAGCTGATACTTTTGGACTTGTCCACCAGAGGGACGGGCGCGGCTACGAGAGTTTTTTTACGATACAGATCAACTAGTGATTCCACCAAAACTATCGTCTTCAAAGATGTGGAAGAACTAGGCGATAGAAATTACCACACTGTGCTTTTGCACATCTCGGATGTCATTGGCGACAATGGAAAGAAGATTTCATCTGTTACACTTTACGTGGATTGTGAACCATTTGGAAAGGCAGAGACAGTTTCGCCAATTTCTTCAATCTTCTCGTACAAGGGTACTTTGCTGTCCCGACTGGAATTCAGAATAGCACAGCGAGGATTTGCTAATAAAATTCACTCGCAATTTGGGGGAATCCTTGAGAAAATGACTCTTATCTTCAAGCGGCCCGTGGGAGATTTGATTGATGGACCAGAATGCGGCACAGGTCTTGGAGCATTGAGAGCTCATCAAGAACCCCAAGGAGTAACTGATACTGGCACCTTTCCACACGAGGTCGCTTACGATTTGATTGGTCTAATCAAGGATCTTCGATACGATCTTTCCGTGCAGGTTGCTGAAACCAAGTACCTGCGAGGATTGGTAGAAAATTGCCAAATGTGCAGAGTGCACGATTTCTGTCGCTTCAAGCCTTGTTTTCCCGGCGTACCTTGCTTCAACGATCCCGCGTCTCTTCAGGGATTTGAGTGCGGTGAATGTCCATTGGGAATGGTTGGAAATGGTGTCAACTGCAGTGACGTCGATGAGTGCAAGCTTGTCGACCCTTGTTATGCAAGAGTCACGTGCCAGAATAGAAGTCCCGGTTATTGGTGTCCACCATGCCCTGCGGGTTATTCTGGCAAGGAGGTTCATGGGATTGGATTGTATTCTGCACGGACCAATAAGCAGGTTTGCACAGATATTGACGAATGTGCTGACAGTCCCTGCGCAAAAGAAGCAAAATGCACCAACACAAATGGATCATATGAGTGTGGAAACTGTCCTCCTGGTTACACCGGCGATCCCACAATTTCATGTTACTACTTAAACTACTGTGACCCTGAAAACCCCAAGAGTAATCCTTGCAGCCAGTACGCTAAATGCATTCGATTGGATAGTGGCCGAGATTTCATGTGTCAGTGTCGCACGAACTACGCTGGCAGTGGCCTTCTTTGTGCCGAAGACTCCGACAAAGATGGTTTTCCTGATGTCGAGCTTAACTGTTCTGATAAAGGCTGTCGTAAGGACAACTGTGTGTATGTTAGTAACCCCGATCAATTAGATGCCGACGGTGATGACATTGGAGACGTTTGTGACGAAGATATGGATGGCGATGGTATTAGGAACGAGGTGGACAATTGCGCCCGTATTGCGAATGCAGCACAGTATAACAATGATGGAGATCTGTTTGGAAATGATTGCGACAACTGCCCTTATGTTAGCAACTCGTATCAAAGAGATAGCGACGGAGATGGGATCGGAGACTCTTGCGACAGAGACATCGATGGAGACGGTGTAATAAACTCCTTTGACAACTGTCCAAAGATCTATAATCCGCTACAAGAGGACCGCGATACTGACTCAGTTGGCGATGTTTGCGATAATTGTCCTTCTGTTCGCAACCGCAGACAATATGACAGAGACGATGACAGTCTCGGAGATTCCTGTGATACAGACCGCGATGACGATAATGACGGCGTTGATGACATGGTGGATAACTGTAGAGGAGTGGTCAATCCTGACCAAGTAGATAACGATCAAGATGAAAAAGGTGATGCATGTGATGACGATGACGACGACGATGGCGTTGTGGACTTGAACGATAACTGTCAACTCGTGCCCAATCCTACTCAACGAGATTTGAACGGCAATGGAATAGGGGACCCTTGTGACGGCGATTTTGATAACGACAAAGTCCCGGATGCTGAGGACCCATGCCCAGTGGACCATCATTGTACGCGTACAGATTTCACCAGAATGATCACTGTCGAACTGAATCCGTATGAATCCCCGAGCACACCGCCAGTTTGGGTGGTGGATTCTTCGGGAACCCAAGTAACAGAAACAGCAAACAGTGACCCCGCTATTGCAGTCAGTCAAACGCGGTTCGGTGGTGTGGATTTTTCGGGAACTTTAGATGTGTCAACGCAACACGATGATGATTTCGTGGGAATCGTGTTCAGTTACCAAAGCAACAAACGGTTCTACCTTGTTTCGTGGAAACAGAGAGACCAAGTTCACTGGAACGTCAAACCCTTCAGAGCAGAGGCTGTGAAAGGAATTCAGATTAAGCTTGTCAACTCTGAAACAGGGCCAGGGAGTGACCTCAGACATGCATTATGGCATTCGGGTGATGTTAAAGGACAAACCAAAGAACTCTGGAGGGACTCGAAGGAGGAAGGCTGGGAGGACAAAACAGAATACTCCTGGAAATTAATTCACAGACCGACAATTGGATTGATAAGGCTTAAAATTCTTTCCAAAGGGGAAGTTGTGGTAGACACGGGCTATCTTGTCGACAGGACTCTCAAAGGTGGCAGAGTTGGACTGTACGTGTTTTCACAATCTGATGTGACCTGGAAGCACCTCTCTTACAAGGCTAACGACGTTACCCCGGATGACTATCGAGCTGAAATCCCTAGCAACTGAGGCAATTTCTGTTGTGATTATATCGAGTGCAGAGAAATCAAGATCTCGGACGAATCGTATCGTTGCAGTCCTTCATCTAAGCTGAGGACCGTTGAGGCCCCTTAGGTCAGGACAATGTAACAATTTAGAAAGGCTCAAGAAGGATGTCTTTTCGTCCAGAAGAGCTCCCTTAAAAGCCAATTGCAGCAGATGAAGGCTGAATTCGTTAGCTTGTCTTATtatatgaaaatggtttgaactcaagagtaacatacctttattgaaaaagattgtttgggtaactagagtcctgagagggactgctgttggccactcacgtttcgacaacctgcgcggaagtcatcttcacagtcaaaacgtacttgactcagaagatggcttccgctcagttgtcgaaacgttagttgccaacaacagtccctttcaaaactccagtttcccagatgatctttttcaatcaagctttgtCGTATTATATATGCCAAGAGGGTATGCGAAATGGAAGAAAGCAAGCTTCATAGTTAAATCGAGACTCTGTGTATGGATTATTTATACTTTAGTAAAATAGACAGGGTTAGAAAAGTCTAGAGCCAGCTTTTTGCCTAAGTCGTAAAATGTGCTTGTTATTATaaaaaacaaacaaacaaaaaccaaaAATGAATTAGAAAGCCGTTAAGGTATCACCAAAAATTTACGGCCTTTGGTGAACAAAAGCGCTATTTGTTATGTCTTCCACTGTGTAAAATACAGATAATTATTTTAAGGATTAGAACGTGAAAGATATGTATCTTGTACATACCTGACCCTAAAATGTGGTAAGTTATGTTTTTGAGTTGAAAACAAACTTAAATTAGGGGCGTTAGTTTGTCTAATACAATTAAAAGTATAATTACCGGTAAGCAAACTTCGTCTTGACAAACGAACTAAGACAGATATTTCTGTGAATGAATGCCACATCCCTAAGCATTTTTTAAAGAACCATACCGCAAAAACAGGTTCACAAATAGAGATTTGTCAAGTGGACTTGTTGATAGCCATGTTGGTTCGTGGAAACATATACTGATTCAATTTCAACAGACAACGAGGCACTCAGCTTTGCTTTGATGTGGCCAAGCTCATAATAAAAAATTCCCCGACTTCAATTAAAATAAGGCCTCGAGTTACTGATCTCTTATTTTCGTCAGAGTATGTATTAAACACGGAGATGACCCACACCTCCTGTGTGGCATTATAATAGTCCATGGAATGGTTTCAAACAAATGCATGGAAATTTGTTAGCGAAGTGCATATCTAAATATTACTAACCCATTTTATGCATTTTCTTCATGTTGAAAGAGTCCTTTTGTAAGGTCGTAGACCCATTTTTTCATAAGAAATAAATAAATGAGAATACGAAGAGAACGTGGCCAATCATTGGCAGTAATTGTTGCCGTTTTATTGTATTTTAGACCTTTTCAGTAGTACGGTTTTTCTAATTGAGACTTGGTGATGATTCTCAAGAGAATCCTTTGATGTTTCATTTTTGGCACGAGTGCACGCACACATCCATTACTTTTCTGGCATTTTGATTGTGCCGTCCCACTGTTCTAAAAAattgtttcattttcaaggccacgaaatttacggcggccatcttgaccgctgatccaaagctgtgaggtagtctcactggcgatcaaaatgaccttggcttcaaatgttggcgcgcgcaaaaaatcggttgcacgatccaagccttttCTTCAGTTCAGTGTGCCGTCCCAAACCATCCCTCTCCTTTTCTGTTCTGTCGCAAAAATAGAGCCCGTAAATAGGGCGCATGACTTGTCGAGGCATTTAACATTattaggaagcttacgcaaccacgacgacgacggcaacaaggacgtcacaaatttgcatatttgattgtcaaaaacaatagttgtgcacgctttgcacgtgcagttttcatttttgacatttcgctgacgttctcgttctttctgcgacgtgaaatgacttgttttgcagttgtgtggacgacgtgaccatatgatgacaaatgttaaagtttgtcttctctatgaagcgctggttccaatttaattcccagatagttagaacacattttgcaagcgtaatgactttggataactgagaaatgattacagaaacgcgaagttacattttcagatTGTCGCGAGTGATAGATTTTGTATTGTTCTACATAATTCATTTCGCGAGTCGGAAATATCAATTAAGACGCAATTGGCACTATAGGAgctaCAAGAGAGTCTGAGGTAAGAGAACGGAATCTCTTACACGGACTTTACGggcacgaaaagtttccgagacttttgagaaaagggccccAGGCCTCGGTTGTTCGGAAAAATTGGTTAACACGGCGGATGAAAACCAGCAAAATCAACTGAGCTATCCAGTGGATTGCACTATCCTCACTTCGAATAACTGGGACCAGTCGTGTAAACTGTTGCCTAATGACATCCTTttagggagtttaagaagctacgacggctctgccacgaaaacgtcacattaaaacagaactttgcatgaggttaagtgttttccgactattccgtactggtgacgttgtacaaaataggcgaagtgcacttttgcatgtttggcacgaacgtttggcaaatgaagaatgaaagatttactgccac

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8JHW2	Thrombospondin-3a OS=Danio rerio OX=7955 GN=thbs3a PE=2 SV=2
Q9Z1T2	Thrombospondin-4 OS=Mus musculus OX=10090 GN=Thbs4 PE=1 SV=1
P35443	Thrombospondin-4 OS=Homo sapiens OX=9606 GN=THBS4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000875 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05735 all species →	TSP_C	Thrombospondin C-terminal region	Family	Interproscan
PF02412 all species →	TSP_3	Thrombospondin type 3 repeat	Domain	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF11598 all species →	COMP	Cartilage oligomeric matrix protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017897 all species →	Repeat	Thrombospondin, type 3 repeat	Interproscan
IPR028974 all species →	Homologous_superfamily	TSP type-3 repeat	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR008859 all species →	Domain	Thrombospondin, C-terminal	Interproscan
IPR003367 all species →	Repeat	Thrombospondin, type 3-like repeat	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR024665 all species →	Domain	Thrombospondin/cartilage oligomeric matrix protein, coiled-coil domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10199 all species →	THROMBOSPONDIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04659	THBS2S; thrombospondin 2/3/4/5	-	Glycosaminoglycan binding proteins	ko00536	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.