Gene detail

Detailed information of amic_s0048.g50.t1 in Acropora microphthalma

Genomic Location: sc0000048_pilon:961741...968459
NR annotation: XP_029193207.2, DDB1- and CUL4-associated factor 12-A-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0048.g50.t1

AATTAATTACTCTTGATTTTCCAGCTTTTAGCTCGTTGATCTTCATCAGCATACTTAAGAGTATTTTTTTTTCTGTTTTCGTCGCTGCTGTTTGTGTAGTGAGGTTTCTTTTCAAGAAAATTTTATCAAATTCTATCTGGTTTTGACGAACTGACGTGCTCAAATTCAGTGTTGTTCCACTTTCGGTTGGAGATCGGTTCTGTCTTCATCTTTTTTACATCGAAGAGAGAGGAACATTATGCTGGAAATTCATTTGTAGGATCAAGACCACAAGAATTTCCGTGCGCCAGTTTGTTGTTTCATGCTCTGGTGGCTTGGATATGTTTCTCTGACTGAATTTTCTTGACGACATGCGCTTGCATATTTCATCTGCGTTGTTTCTTCACGCTTTGAGGTGTTTTGCTTGTTCCTGTGCTCTGAAAAATGCTGCAGTCTACGGTATTCGTGCAAGGATGATACTTAAATAATTCCTTACTAACGATCGTTGGTGTTGAAAAGCTGAATTTAATTGATAGGATGTCTTTGCTAAAATACGTGCGACGACGTGAGTCAACGAACCGGACGTTACATTTACAAGATTATGTTATAAATCGTCTTAAATCGAGACGTTTGCCTTCATTGTTCCAAGAAAAGGAATTTTCCTTGGGAAGAAGTGATAAGGTGTTCGCCTCACAATGGCTGGATGAAAGGAAAGTCGTGTGTGGAACAAAATCGAACCAGCTTTTTGTGTTGGACATGATGTCAGGTTCAAAAATCTCTCAACCATTGTTGGAAGGAAGTCCTTTGAGTGAGATGCCTGAAGTTAATTGTGGTATTCACAGCATAAAAATCAACCACGAAAGTAAACTGTTGGCTACAAGTGGCCAGAATCCGAATCACTTGGCGGTGTACAGCTTACCAACCTTTGACCCAGTGTGTGTTGGGGAGGGACACTCTGATTGGATCTTTTCAGTGGAATGGGTTGATGATTTTCATCTAGCCACAGGTTCAAGGGATGGTAGCATTTCATTATGGTGCGTCCAGGATCCTGTAAGAAGGATGAGAGACAATGAGTTAAGCCTTTCTATCACATCCCCTGCAAATAGTCTCTGCAGTACTTTAGATCAAGAAAATGGAAAAGACAAAATAAGGGACTTGGCTTATGACCAAAATTTCCAGACCCTCATTTCTCTGTCTGCTTCGGGTTACGTACATCTGTGGGATATGACAACGTGTCAAACGAAAAGAAGCTTTTCTTTGGAATATGCAGAGGAAAATGTCTGCCTTGCCTTGAAAAGTGACGCCATGTTGTATGCCGTTGGGTCCCAATCCCATGTTTCACTTTACGATGTGAGATCTGACAAACCCGTGGATATTATCAGCTCCAACGATCCAGGGGCTGGCGTTCGTTCTCTGAGTTTCCGAAACCTCTTATTGACCGTTGGAACTGGTCGAGGCTCCCTTTCTTTCTTTGACTTGAGAACTGGCAGCTATTTGAAGCACAGTGATAACAATGAAATGATCTGTTATCGATCAGGAAAAGGGTGGCTGAGAGACCTGGGCCAGTTCGATTTCTGGTTGGATCACTCACAAGCTTGTTGCAGTAATGCTATTTACACACATTGTTACGACCCAACGGGTACCAAGCTCTTCGCTGCTGGAGGACCGCTCTCTTTAATGCTCTATGGAAACTACGTGGCCCTTTGGGAATAACACCGCTCGAAGCCTGGGTGTGAAGAATTGCTGTCGATGGACGGAAGAGAGTGTTAAAGCATTTACGACGACTTTATAGGAAATGAGTGTTGTATTTCTTAGTTGTTGTCATGGTAGCTCACAAATCAGTCGTTTAATTATAGGTAGGAAAATGACCTTAAAAATGGAGTTTTCAAAGGTTCTTTTCTTTTTGTGCGTGTGTTGGTTTTCGTTATGATTTGCGTGTGTCTCAGTCACATTTCCTCCTAACTGGTTTGACACGAAGTATCACGCGCGTTTAACATGCGAGCATCTCGCGATCCTCGAAACGGCGAGCTGGCTTAGCCTAATTTTAAAAAGGGTCCAAGTTTGAAATTTTTGTAGAACTGAGTTTTACCTAGAGTACTTGACTTTCACTGTCAAACTGCCGAAATAATTTGTTGTGTCAGATCCACTAAGAACTCGTATCGAGAGCACATTTAGCTGACCAACTTCTTCCCCTCTCTGTTTGTGATAGAAAAGCGGGAAAAACTCCAAAGATATTTAAATATTTCGTGTCGCATGTGACCTCGGGTTGTAGACAATTAACATATTGTGCGACCGTCTTACTTGTGATAGAAAATATAAAGGGATCAAGTAATAGAGTAATTTTCTACGTAAATTGTAATTGTATTATAATGCCATGAATATCATAAGTTTGCTTTAAATACAAAATAAAATGATTTGTTGCAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q63ZP7	DDB1- and CUL4-associated factor 12-A OS=Xenopus laevis OX=8355 GN=dcaf12-a PE=2 SV=1
Q8BGZ3	DDB1- and CUL4-associated factor 12 OS=Mus musculus OX=10090 GN=Dcaf12 PE=2 SV=1
Q5T6F0	DDB1- and CUL4-associated factor 12 OS=Homo sapiens OX=9606 GN=DCAF12 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008207 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR051191 all species →	Family	DDB1-CUL4-associated factor 12	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19860 all species →	DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0080008 all species →	Cellular Component	Cul4-RING E3 ubiquitin ligase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11803	DCAF12; DDB1- and CUL4-associated factor 12	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.