Gene detail

Detailed information of amic_s0048.g64.t1 in Acropora microphthalma

Genomic Location: sc0000048_pilon:1091182...1093930
NR annotation: XP_015755187.1, PREDICTED: zinc transporter ZIP1-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0048.g64.t1

CTACGTTCCGGGTTTTTTAACGCTGAGTAGAAAAGAAGGAGGCAGGTTTCTCCGTAAACGTCGTTAAGTTCAAAAGATTTCTTTGCTTTTTACCTAATTTGTGATACACAATGCAAGACGTAGTTATCAAAGGAATTACTATCGTCGGTTTGTTTTTGCTCACACTTCTTGCCGGTCTGCTGCCGATGAAAATCCGTGGCTCACACACGACGGCAAGACAGCGCCTGAGCCTCTGCAACTGTTTTGCTGGAGGAGTTTTCTTCGCCACATGTCTGCTAGACTTGCTGCCGATGGTACGAGAAAAATATAAAAAGGCCTTTCAGCTAAAAGGTGTACAAACGGATTTTCCAGTGGCAGAGTTCACGACCTGTGTCGGCTTCTTCTTAGTGTTGATTGGGGAACAAATTGCGCACAAGTTTCATGATTCCTCTCTACTTCACGGGGATTCATCAGATGCTAGACAGCCGTTGTTGAAAGGGCATCGACAATCACACGAGGGTTTCAATCCGGAGAGTTCGGACAGCAACTCCATTTCGGTGCATTGTCATCAAGTGAAAGATGCGAGTATGAGAGTTTACATTCTAGTTCTTGCATTATCATTACACTCAGTGTTCGAAGGACTTGCGCTTGGTTTAATCACAGAGGTGGATCGTCTAGCTCAAATAGCCGTGGCCATTGTTATCCACAAGTCGACAATTGCATTTTCGCTCGGTGTCAACTTAGTACAACACATGATGCCAAGGAGAACAATCATCATTTCAGCTGTCCTCTTCTCTGTCATGAGCCCCATTGGAATAGGAGTAGGTATCGCTGTGCTTGATAGCTTATCGCAGCTTTCCAGTAACCTAATCTCAGGGATTTTGCAAGGCATCGCTAATGGAACCTTTTTATTCATAACGTTCTTCGAAATCTTCCAACAAGAACTAGATAGCAACGGAAATAATCTTCTGAAAGTTCTTTTCATGCTAACTGGTTTCTCTGTGGTTACATTACTCGTCTACTTCTCCGAGGTCTTAGATCCAGAAAAAAATCACTAGAGCAGTCCAGTTACTAAGAACGGGACTTAAAATCAGCTAGAGCCTCCATAGTGAAATAGGGTTATATGGTCCAGATCGTATTGATTGTTTAAAAATAAGTTAGCTAAAAATGTGGAAGTAACAACATGTATTTGTTATTTTTATAATTTTTTTTTTGAGCCACGGGCAACAACTGGAAGTGAGAGGTCATGCTTTGACATttataatataagccgagaaatttcggagatttgattggtttatagcatcactatttccgaaggttgccttgttataccaccgctgcagtgaccgcaaaagccgtgatttataaattactttcattgattgaactgtttcatgttgtttgccttgaatggtttgtactggtttcacaaaaaactgccaatcatttctttcattgacgtaaaaagattgttacgaacgtagacgcctgtgtttgtttttttcaaccgtaaaaagaaaggtctctcgaaaaatttctcggcatctattataaacaaataatagcatgacctgcacctagtatttggcaataataccggcttgtaatatttcaaaaatttccaaataccactcgccactttgcggctcgtggtattttggacaattttgatgtaacactattattgccaaataccactacaagtcatgctactacctaGCAGTTATATAATTGTTGATTATTAATTTTTGGTACAATATACTTCCGGTTTCTATCATTCACTCAAAATAAATTGTCTTTCCTAAGCTCCCTATTTTGTTTCCATGAACATTTCAGTTTCAAAGGATGGCTGTATGCTTTGTCATAAGAAATTCTCTGTTGTTTTAAATAGTTTTTTTTATTCAAAATATCGAATGATTAGTAAATATCATGAAATTTTGTGTCCCAAAATGCTCTAAATATCTTTAATAATATCTGGATATTTGTGCGTAGGCCAAGATGACTGCATAGAGGTGAACGAATTCTCACTTGATACAGTTTGCTACCCTTTGTTCTGTGTAATTGTTCTAAACATGACAAAAAAAGGGGAGTTTATCTCATTTCCAGACAGTGGCATTTTAGATTTAGATTTCTGAAGTAAGATTTCATTTTGAAACAATTTTTTTATGTCTCAATAATTAAATTATTATAATATTGAGATATATTTTAAAACAATTCAAGAAGCCTGATTAAGTGTGTTAATAACAAGAATAATTGTTCATTGGGTCACTGCATACCTTGTCCTCCAAGTAAATCTTTTAGTGGACTGTCTGACACATGTTTTCTGTGTAATCTTAAAAATCAAATGAAATGTTCAGGTAGTTACCTGAATTTTGAATTTTAGAAAAAGAGTAATTTCAGTAAAATGACATGACTTAAATGATTGCATTACAGTCAGATACTGCGTGACTGCCATTGGATCTACTTGGTAAGCGTAGTCACTGCCAATAGATGTGTATGTAGATATCAGTAGATATTTTCTGAAGATATGTCAATTTTAATGAGGTGGCTCAAAGAAATTGTTTATCTAAACAGAAAACTGGAAGAGTGGAGAACCAGAAATATAAATATATTTTTCAGCTGTCGTTTTCTTTTGTTAAATTTGTTGTTCAAGATCGTGATGTCTTTTTAGTATCTCTTTGCTGTATAACAGGTTTGTCTCTTTTTATTGGAAAGAGTGGGTAAATTGTCAAGCAACGACTGGACAAAATAAAATTATTATTGAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P59889	Zinc transporter ZIP1 OS=Danio rerio OX=7955 GN=slc39a1 PE=2 SV=1
Q5E960	Zinc transporter ZIP3 OS=Bos taurus OX=9913 GN=SLC39A3 PE=2 SV=2
Q6QQT1	Zinc transporter ZIP1 OS=Takifugu rubripes OX=31033 GN=slc39a1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005893 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02535 all species →	Zip	ZIP Zinc transporter	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003689 all species →	Family	Zinc/iron permease	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11040 all species →	ZINC/IRON TRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030001 all species →	Biological Process	metal ion transport	Interproscan
GO:0046873 all species →	Molecular Function	metal ion transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005385 all species →	Molecular Function	zinc ion transmembrane transporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0071577 all species →	Biological Process	zinc ion transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14709	SLC39A1_2_3, ZIP1_2_3; solute carrier family 39 (zinc transporter), member 1/2/3	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.