Gene detail

Detailed information of amic_s0048.g7.t1 in Acropora microphthalma

Genomic Location: sc0000048_pilon:150626...153378
NR annotation: XP_015770859.1, PREDICTED: ER membrane protein complex subunit 2-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0048.g7.t1

GTTCCAAACGGTGGTATGTCATTGTGAATTCAATATGGCGGACGAAGTGATAGATCTCGAAGTTGCCCGGCAAAAAATGAGACAGTGGAGGGAAGAGCCTCTTCGAAACAGCGAAGAGATCACTGATTTCGGTGAATGCCTTATCCTAGAACATGGAAACAAGTTGGGAGATGAGTTGTGGACGATATATGAACAAGTCTTTCTAGCATCCATAGACTGTCGTAAAATGGATTTGGCGACCATGTGTTTGAGGGAATTGAAAACTCAATTTCCCGACAGCGTTCGGGTTCAAAAGTTGAACGCAATGCGGCTCGAAGCATTCGACAAGTATCAAGAAGCAGAAGAGATCTACGACAAGATCTTGGAGGCTGAGCCTGCAAATGCAGTCGTTCGTAAACGTTTGATAGCAATTCTCAAAGCGCAAAACAAGATCCCAGAAGCGGTGAAGGAACTCAATGAATATTTAAAAAAGTTCATGGGGGATCAGGAAGCTTGGACCGAATTGGCAGAACTGTACATTTCGCAACAAGAACACAAGAAGGCGAAGTTTTGTTTGGAGGAGTTAATTCTAGTAAACCCCCATAATCATTTGTTTCATCAGAGATACGCTGAAATTCTCTACACTCTTGGGGGAAACGAAAACATGGAAAAGTCGAGGAAATACTTCGCCCAAGCTCTCAAATTGGATAACAATAATATGAGAGCGCTCTTCGGGTTCTTTATGGCCTCAGCCCATTTAGCAAATTCTTGTAAAGATGCCAAGATAAAGAAAGAGAATTCCAAGTTTGCGGGCTGGGCAGCAACACAAATTAATGATAGGTATCAACGTACTTGTCAAGAACAGGAGAATGATAGTATGTCTGAACTTGAAAACATGTTGGATTCACTTCAGTTAGCTGCACCACAGAATATTCCCCCACAGCGTCTTACTGAAAGCTAAGTCTCTGTACATGTTTAGAGTACTTTTATAATGTACTTTTGCTTAGTTATTAACCACTTATTAATTGAAGAAATCCCTTGGCTTGAGGTGTAATAGTCCAAGTTTTTTTTTTCAGTTCTTTTCATCATATTGCTAAAATTTTTCATCGTATTGCTAAATCAAGTTGCATGAAACATGGTTAAGAAAATAACCAAATCAGGGATGAGGGACTGGGGGGGATTGAGCCACCCTCCCCCCAATTTCAGGCAAAAAAAATGAAGCAGTTAAAGCAGCATTTGTGCGCGTCAAGATTTCAAAATATTTTCTACACATTGGCACCTCTGGGGCTTAATTATTATATACAACATATGCTCCAGTGTCCCATCAATTTAGTATGTAGCTATAGTTCATCACCTCATGCTCTGTAGGGATCAGCCTTTTAGATTATGATTTTTTTTTAAGTGGTTCTAATTTTTGTGGGTCAAAATGAGTAAGTTGAAGAATTCATCCTATTTTGATTCTCAATTTCCTTTGTCGTAAAACCCTAAGTAAATGATGTGACATTAGGATTATAATGGAAGGAAAATTGTGAATCAAGCTGTGAGTAGTTGTTTTAACATGAAACTAATTTTGACCCACACTACTGTTTCCTGGTAGAGATGTATGAGAATTTTTTTTCCATACATGTTCTGCAGAAACTGTAGCAGTCCTGCAAATAATAATAAAAATAATTAATCTCACCAGCTCAGATGTATCTGGTGATTATGGCACACATTGTGGCCTATCCAGTTAAATGCATACATGCACTGTCTTATTTCAATAGAACACAACCTAACTCTTCCTAAAGTATAATTAAGGAAAACTTATTCGGAACGTTAATCTGTCCATTACTGTGAATTGTAACTTGTGACATACAATGATAAATTTATTCAGTATGTAGGGAGAGAAATATTATGTTACTGGCAAATAACTTATCAAGTTACCAAAATTATTGTAATTGAGGGAAGGCATTCTTTTTCACTCTAGCTCTGAAGAAGTGAATAATATTTTTTTGTACTTTGCACAATACCGCTGAGTTAAGCAATCTTAGAATGCACAAACAGCACTATTATTTGTGTGGAATGTACAGCTTTTGAAATATTTTAGGGGGCACATCTGGCCTGAAAAGTGTTACTTACATCAACAGCATAATAAAAATCATTACATTTCTGTATTTAAGAGAAAAGCAGTCTACTAATTTTCATCACACTTGTACTGTATCAAATAGCAGGCTTTTTCCATTTGAACTGCAATGTTCTGATTTCTGAATGGCTAAACACCCTTATGAAGAAAGCCTTTGCTTTTTAggctcatccttggtgtacatgaatctgtcaaactcatggatgatgtgaaacaaaaaataaaacaaaatagccttaaataataacaaaatgccagcataagctaccaaaacaaaagggaaaaatcaccagtttagcttacagaggtaaaccTGCCTTTGGAAATTTTGCGCAAAATAATAAAGAGTTTTTTTTTTGTTCATTATTTGATTAGCCATGGCCCATATTTATTTGTATTTAAATTAACTGCTGATAACAGATTGGCTTAGACGATCTGATGCTTGTATTTTTGTTGTGTTAGGCCCTCACTAACAAATTTGAATataaaaagttggagcaacttcagaatccagggtcagcataggcaaattacacagaaggttttgtagaatgagacaggtatcaatggcagcttttgtttttcagtcatacggaaatgagtggcccaatactatactctgtaattcagccaaTAAATAAACTTTTACTTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6TGY8	ER membrane protein complex subunit 2 OS=Danio rerio OX=7955 GN=emc2 PE=2 SV=1
Q5R882	ER membrane protein complex subunit 2 OS=Pongo abelii OX=9601 GN=EMC2 PE=2 SV=1
B0BNG0	ER membrane protein complex subunit 2 OS=Rattus norvegicus OX=10116 GN=Emc2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009114 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14559 all species →	TPR_19	Tetratricopeptide repeat	Repeat	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR039856 all species →	Family	ER membrane protein complex subunit 2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12760 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0034975 all species →	Biological Process	protein folding in endoplasmic reticulum	Interproscan
GO:0072546 all species →	Cellular Component	EMC complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23563	EMC2, TTC35; ER membrane protein complex subunit 2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.