Detailed information of amic_s0048.g71.t1 in Acropora microphthalma

Genomic Location: sc0000048_pilon:1184400...1216730
NR annotation: XP_044163899.1, tetratricopeptide repeat protein 37-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6DFB8Tetratricopeptide repeat protein 37 OS=Xenopus laevis OX=8355 GN=ttc37 PE=2 SV=1
F8VPK0Superkiller complex protein 3 OS=Mus musculus OX=10090 GN=Skic3 PE=3 SV=1
Q6PGP7Superkiller complex protein 3 OS=Homo sapiens OX=9606 GN=SKIC3 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002786 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13432
all species →
TPR_16Tetratricopeptide repeatRepeatInterproscan
PF13181
all species →
TPR_8Tetratricopeptide repeatRepeatInterproscan
PF13431
all species →
TPR_17Tetratricopeptide repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019734
all species →
RepeatTetratricopeptide repeatInterproscan
IPR011990
all species →
Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR039226
all species →
FamilySki3/TTC37Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15704
all species →
SUPERKILLER 3 PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0006401
all species →
Biological ProcessRNA catabolic processInterproscan
GO:0034427
all species →
Biological Processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'Interproscan
GO:0055087
all species →
Cellular ComponentSki complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K12600SKI3, TTC37; superkiller protein 3-Messenger RNA biogenesisko03019deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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