Gene detail

Detailed information of amic_s0049.g28.t1 in Acropora microphthalma

Genomic Location: sc0000049_pilon:257456...290143
NR annotation: XP_029199127.1, kinesin-like protein KIF28P [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0049.g28.t1

ATGGCAGAATCGGTCAAGGTAGCTGTCCGAGTTCGCCCGTTCAACTCGAGGGAAAAAGATCGGGGAGCGAAACTTGTTATAGAAATGATCGGTGCGATGACTCAAATCACAGACCCCGAAAATCCAGGAAACCCGCCTAAAGAGTTCTCTTTTGACTACTCTTACTGGTCACACGATGGTTTCCAAGAAGACGAAACGGGCTACCTTAGACCAGCCGCAGATAAATACGCAGATCAGCGTAAAGTATTCGACGATCTTGGAGGTGGTGTTTTGAAAAATGCAATTGCAGGTTTCAACTGTTCTTTGTTTGCCTATGGACAAACGGGTGCTGGCAAGTCATATTCTATGGTTGGATATGGAAACAATAAGGGCATTGTCCCAATCACATGTGATGAATTGTTTAAGATAGTGCAAAATTCTGCCGAAGATGTGAAATACCAAGTTTCATTTAGTATGTTGGAGATCTACAATGAACAAGTTAGGGATTTACTTGTAAAGAACAATCCAAAAGGAGGACTTCAGGTTCGACAGAACCCAAAAGAAGGCTCCTTTTTTGTTCAGAATCTAAAAAGAGTAGCTGTTGTTGATTATCCAGACATCGAAAGAAGAATTGAAGAAGGAACTGCCAACCGCACTGTTGCTGCAACTCAAATGAATGCAACAAGCTCCAGAGCTCACACAGTGGTGACCATTGTGTTTGATCAGATCAGCAAAAACCAGGCAGGACAAGAAACCAAAAAGAGCAGTAATGTAAACTTGGTAGATCTTGCAGGCAGTGAAAGAGCAGACAGTACTGGCGCAACTGGAGACAGGCTCAAGGAAGGAGCAAACATCAACAAGTCATTGTCGGCATTGGGAAACGTCATCTCAGCCTTAGCTGATCTCTCCATGGGCAAGAAAAAGGTGTTGGTACCTTATCGTGACTCTGTTCTGACTAAACTGCTTCAGAATGCCCTGGGTGGCAACAGCAAAACGATCATGATAGCTGCATTATCACCAGCAGACATTAACTATGATGAAACACTTGGTACTTTGAGGTATGCTGACCGTGCCAAGAAAATCAAGAACAAGGCTGTGGTGAATGAAAATCCCATGGACAAACTAATCAGAGAATTAAGACAGGAAAACGAACGGCTTAAAAAGATGTTTGAAAGTGGTGGAATGCCCACCGATGTGGGTAGTGCTGGAATGAGTGACGACGAAAAAGAAGAAATGCGTAAAAAAATGAGAGAAGAGCTGTTAGCACAAATGGAGTTTAATAATCAAAACATGATGAGCTGGGATGAAAAGGTTGAGATGTCCCGCAGTGATGAAGCAGAAGGGGGTGGTCAGGGAGAGAGACAGAAGAAAAAACAAACCATTCCTCATTTGATCAACTTGAATGAAGATCCACAGCTGTCTAGGGTGATTGTGCATTTTCTTGAACAAGCGGACACAAAGATAGGAAGGAAGGATGCAGATCCAGCACCTGACATCCCATTCAGTGGTCTGAGTATTCTGAAGCAGCATGCCCTGATTAAGTCAAACAATGGCGAGATAAGCATTGAACCAGCTTCACCTGGTGCTAAAACTAAAGTGAATGGAATTCCACTGACAGGGGAGCGCGTGCTTAAGCATTTTGACAGAATTTTATTTGGCTCCAACCATATGTACATTCTGGTAAATCCACAAAACAATGAGAAAGCAGAAGGAACTCCTGACGACGTAGACTGGGAATTTGCTCAGAAAGAAATCGCTCAAGCCAAAGGTTTTGCCACAGGATTTGGCTCTGGTCTCTCAAAAGACCAACAAAGAGCTCAGGAGCAAGTGTTAGAGGTACTTCCAATGGTCAGCGAGGTGAATGCACTCAGTGAAGAACTCAACAAACACAAGAATTTCGAGGTGATTCTAATATCTGGAGTGGCCCAGGGAGAGAGTGGAAGTTCAGAAACAAAAGTTATGGTAAGAATGAAAAACTTGTTGAACAACAATGTCTGGCTTTGGGACCGCGGCAAGTTCCTAAACAGACGTTTCCTTATGCAGGATTTATATCAGAGGTCCATGGATGGCGAAGATTTGAGTAAAATTCCAAAAGAAGAGGATCCGTTTTGGGAGCCACCAGAAGATGTCTTGATCGGAACTGCCAGCGTGTTCTTACAGAGTCTTAGTTATGCTTTGGACTTTGATGACAAACTTTCTATAACGGACTACAAGGGCGAAGAGGTAGCTACAGTCGTCATAAATGTAGCACCGTGTTATGCCAACGAGAAACCGCTGAGTGAAGAATTCTTCGTCGATGAGCCGTCTGAACTACTTGGTAAAGACTATCACTACAAGGTCACCATCCGTAATGCCACAGTTCATGATGCCAAGTTCAACAAAGGCTTGTACATCAAGTACAAGCCATTCAGGGAAAACGAGGACACACAGACTAAAACCGTAACAGGGACGTTATCTCCCGAATTCAACCATTCCAAAGTATTTCACTTCGATAGTATCACCCAGGATCATTTGGAATGGTTTGATGCAGGCTGCATCGCCTTCCAACTGTTCGGTCGACAGGAAGACAGCGACCCGGACGCTGCTAGGTCGAGAATGACCACAAAGGAACTTCGCCAAATGGAAATGCAAATCGCCAGACCAGGCGTGGGCCCTCGTTCTACAACAATGATCAATGCAGACACCTCATCCTCTCAACTCAAAGCTGAGCTTATTTTGCTTAAAAGGAAAAACCTGCGATTGGAGAAGAAAGAAAAACGCATCCAGGATCTTTGTGAGGAGTGGGAAAAGAAACCGCCCGAAGAACAATCGTTTGAGGCTTTTCACCGCGCCATTTCCGCAGCGGCCGCACATCAGGGTGGAAAACTTAAGTACAAAGTTAACATGCTGATGGGGTACTTAAAAGAAACAAACGGGACAACAGAAAATGGAGGCCAAATAAAGATGGACCCAAAAGTAGCTCAAGGAAGTCGCGCCTGTTCAGTCATGTAA

Transcript

amic_s0049.g28.t1

GCCCACCGAGCGTCACAAAGTTACACTCAGACAAAAGAGTTGACAGGCTACGACCTAAAACTAAGGAGTTCGTGCTAGAATTCCCGCTAGCCAGTCATGGCAGAATCGGTCAAGGTAGCTGTCCGAGTTCGCCCGTTCAACTCGAGGGAAAAAGATCGGGGAGCGAAACTTGTTATAGAAATGATCGGTGCGATGACTCAAATCACAGACCCCGAAAATCCAGGAAACCCGCCTAAAGAGTTCTCTTTTGACTACTCTTACTGGTCACACGATGGTTTCCAAGAAGACGAAACGGGCTACCTTAGACCAGCCGCAGATAAATACGCAGATCAGCGTAAAGTATTCGACGATCTTGGAGGTGGTGTTTTGAAAAATGCAATTGCAGGTTTCAACTGTTCTTTGTTTGCCTATGGACAAACGGGTGCTGGCAAGTCATATTCTATGGTTGGATATGGAAACAATAAGGGCATTGTCCCAATCACATGTGATGAATTGTTTAAGATAGTGCAAAATTCTGCCGAAGATGTGAAATACCAAGTTTCATTTAGTATGTTGGAGATCTACAATGAACAAGTTAGGGATTTACTTGTAAAGAACAATCCAAAAGGAGGACTTCAGGTTCGACAGAACCCAAAAGAAGGCTCCTTTTTTGTTCAGAATCTAAAAAGAGTAGCTGTTGTTGATTATCCAGACATCGAAAGAAGAATTGAAGAAGGAACTGCCAACCGCACTGTTGCTGCAACTCAAATGAATGCAACAAGCTCCAGAGCTCACACAGTGGTGACCATTGTGTTTGATCAGATCAGCAAAAACCAGGCAGGACAAGAAACCAAAAAGAGCAGTAATGTAAACTTGGTAGATCTTGCAGGCAGTGAAAGAGCAGACAGTACTGGCGCAACTGGAGACAGGCTCAAGGAAGGAGCAAACATCAACAAGTCATTGTCGGCATTGGGAAACGTCATCTCAGCCTTAGCTGATCTCTCCATGGGCAAGAAAAAGGTGTTGGTACCTTATCGTGACTCTGTTCTGACTAAACTGCTTCAGAATGCCCTGGGTGGCAACAGCAAAACGATCATGATAGCTGCATTATCACCAGCAGACATTAACTATGATGAAACACTTGGTACTTTGAGGTATGCTGACCGTGCCAAGAAAATCAAGAACAAGGCTGTGGTGAATGAAAATCCCATGGACAAACTAATCAGAGAATTAAGACAGGAAAACGAACGGCTTAAAAAGATGTTTGAAAGTGGTGGAATGCCCACCGATGTGGGTAGTGCTGGAATGAGTGACGACGAAAAAGAAGAAATGCGTAAAAAAATGAGAGAAGAGCTGTTAGCACAAATGGAGTTTAATAATCAAAACATGATGAGCTGGGATGAAAAGGTTGAGATGTCCCGCAGTGATGAAGCAGAAGGGGGTGGTCAGGGAGAGAGACAGAAGAAAAAACAAACCATTCCTCATTTGATCAACTTGAATGAAGATCCACAGCTGTCTAGGGTGATTGTGCATTTTCTTGAACAAGCGGACACAAAGATAGGAAGGAAGGATGCAGATCCAGCACCTGACATCCCATTCAGTGGTCTGAGTATTCTGAAGCAGCATGCCCTGATTAAGTCAAACAATGGCGAGATAAGCATTGAACCAGCTTCACCTGGTGCTAAAACTAAAGTGAATGGAATTCCACTGACAGGGGAGCGCGTGCTTAAGCATTTTGACAGAATTTTATTTGGCTCCAACCATATGTACATTCTGGTAAATCCACAAAACAATGAGAAAGCAGAAGGAACTCCTGACGACGTAGACTGGGAATTTGCTCAGAAAGAAATCGCTCAAGCCAAAGGTTTTGCCACAGGATTTGGCTCTGGTCTCTCAAAAGACCAACAAAGAGCTCAGGAGCAAGTGTTAGAGGTACTTCCAATGGTCAGCGAGGTGAATGCACTCAGTGAAGAACTCAACAAACACAAGAATTTCGAGGTGATTCTAATATCTGGAGTGGCCCAGGGAGAGAGTGGAAGTTCAGAAACAAAAGTTATGGTAAGAATGAAAAACTTGTTGAACAACAATGTCTGGCTTTGGGACCGCGGCAAGTTCCTAAACAGACGTTTCCTTATGCAGGATTTATATCAGAGGTCCATGGATGGCGAAGATTTGAGTAAAATTCCAAAAGAAGAGGATCCGTTTTGGGAGCCACCAGAAGATGTCTTGATCGGAACTGCCAGCGTGTTCTTACAGAGTCTTAGTTATGCTTTGGACTTTGATGACAAACTTTCTATAACGGACTACAAGGGCGAAGAGGTAGCTACAGTCGTCATAAATGTAGCACCGTGTTATGCCAACGAGAAACCGCTGAGTGAAGAATTCTTCGTCGATGAGCCGTCTGAACTACTTGGTAAAGACTATCACTACAAGGTCACCATCCGTAATGCCACAGTTCATGATGCCAAGTTCAACAAAGGCTTGTACATCAAGTACAAGCCATTCAGGGAAAACGAGGACACACAGACTAAAACCGTAACAGGGACGTTATCTCCCGAATTCAACCATTCCAAAGTATTTCACTTCGATAGTATCACCCAGGATCATTTGGAATGGTTTGATGCAGGCTGCATCGCCTTCCAACTGTTCGGTCGACAGGAAGACAGCGACCCGGACGCTGCTAGGTCGAGAATGACCACAAAGGAACTTCGCCAAATGGAAATGCAAATCGCCAGACCAGGCGTGGGCCCTCGTTCTACAACAATGATCAATGCAGACACCTCATCCTCTCAACTCAAAGCTGAGCTTATTTTGCTTAAAAGGAAAAACCTGCGATTGGAGAAGAAAGAAAAACGCATCCAGGATCTTTGTGAGGAGTGGGAAAAGAAACCGCCCGAAGAACAATCGTTTGAGGCTTTTCACCGCGCCATTTCCGCAGCGGCCGCACATCAGGGTGGAAAACTTAAGTACAAAGTTAACATGCTGATGGGGTACTTAAAAGAAACAAACGGGACAACAGAAAATGGAGGCCAAATAAAGATGGACCCAAAAGTAGCTCAAGGAAGTCGCGCCTGTTCAGTCATGTAATGAACCGCTGACGCCACAATCATAGACATAGCACCTGTTTTAGTTAGTAACTTGATTGTAGATATATGGGCTTATCCGGCTTGGAATTCATCACGTTGCAAAAGTAGTTAGTCAGGTTGAAAACGAGATTCATACGTCACCGTGCAAAACTGGGAGAAAAGAAGATGCTATTTCTTCAATGCAATCAATCTCTCAAGGACAAGCCTAATTTACATCACCCTAATTTACATTGTAGATCGCTGCCATGTTTCAACAGTGTTGGCGAACATTCTCCGACAGTATTAACAAATATTGGTTGAGCCCAGGTCGTCACTGTGCTTCAACAAGGTTGGCGAACATACGCCGACAATATCAGCAGGCATTGGTTGAGGTCCAATTCACGCCGTGCCTGCTGGATAAATAATTAGGTCCTTAATGTTGATTAGTCGCTGATAAGTCACGAATATAATAGCTTTGTCATGTTGGCTAAGCATTGTGCCTCTGACAAAATGTTGGCCAAAGAGATTACCCAACATTAATTGAACGAAAATTTTCTGACTCAACGTCTTCGAGCTCATAGAATGCGAGATGATCAAAGTATGTTTGAACGTCTTACCTGAGAGTTATTGCAAACTTGCGTCGCGACCGTACtcacgtgaagagaaggccatgttggtgcacaaaataatggcaaatttggctcatgtgctgcacaataatagtgtcaaatttccaattttgttctctgcgccaacatggcggcgatgacgtcaggtgaaaaaccatctaAGATCACAAGCATGCGTTTAGACTGAAATTCGATAATTTGCAAATGTTAACCTCGCTTTTAATGAGTAAGTGTTCTGCAATTTGCCCTAATTTGTCTTTAAACTCAATACCGACAGGTAAATTCTCTTAACCCGTTTCAATCTTAGCTTTAATACTGGTTAGGAGAAGTAGTTGCAGAATCCATGCTATTGTTTGTCATATTTAGGTTAGTCGTGGGGCGGTTACAAATTTCTATGACATGAATTTTGTTTCTTTCTTGGCTATTTTTTTCCTTCTTTTCTTTTGTTGGATAAACTATTTGCTTTTGCATCGACCATGACTTGGCCGAGAGCAAATGCTTATCAGTTTACAATAGTTTTATTGTAGCTTGCTAGTTCCCACGCAACGCAACACTTACCGCGCAATACTTTGCCTGACATATAAGTAAAATTGTCTGTTACAGTATTTAACTGGTTACGAAACACTTGAGAGCGAAGATATATATTTTTATAGAAAGTTTGATCATGTCTGTGCAGTTAGAAGCTTGAAGTTATATTTAAATATTACTGTGTCGCAAAAATATTGATCTAGGTCTTGAATCAGCAAGATGTGTAGTCGGTAATATTTATTTCATCTTTTGTACAGAGCAATCAGTTTTGTAGTAATCTTTGCAATAAAAAGATAGATTTGGTTTTTCCGGAAAGTTGAGGGCCGACATTAAAATTGAAGTATTACTCTTCGTCAAAGCGATGTAAAAGACTGCTGAAAATGATCTGGTAATCATCTTTGCCCGGGATGGTCCAGTAAGAGCTCACTAGTAGACCTAAGATTATGTGATGAATTCGATTTTATATTAATGAGATCATAAAGATAAGTTGGCGCAAGGCCAGAAATACATTTCAAAGTAAAATCTAATAAATGAATACGCAAAGAAACCGGTAGCCAGTGCAGTTCATAAAGCGCCGGTGCAATGAGAGAAAACTTTCCGAAACCAAGAAGTCTTGCTACTGCGTTTTACACCTTGTAATTTAGCGATCTGCGCCTTTGGTAAGCCAAACAATAAACCATTACAATAGTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D3YXS5	Kinesin-like protein KIF28 OS=Mus musculus OX=10090 GN=Kif28 PE=3 SV=1
F8WLE0	Kinesin-like protein KIF28 OS=Rattus norvegicus OX=10116 GN=Kif28 PE=2 SV=1
B7ZC32	Kinesin-like protein KIF28P OS=Homo sapiens OX=9606 GN=KIF28P PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001130 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00498 all species →	FHA	FHA domain	Family	Interproscan
PF00225 all species →	Kinesin	Kinesin motor domain	Domain	Interproscan
PF12423 all species →	KIF1B	Kinesin protein 1B	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000253 all species →	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR001752 all species →	Domain	Kinesin motor domain	Interproscan
IPR022140 all species →	Domain	Kinesin-like KIF1-type	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47117 all species →	STAR-RELATED LIPID TRANSFER PROTEIN 9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003777 all species →	Molecular Function	microtubule motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0049.g28.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.