Gene detail

Detailed information of amic_s0049.g30.t2 in Acropora microphthalma

Genomic Location: sc0000049_pilon:299426...333881
NR annotation: XP_029199100.2, AP-1 complex subunit gamma-1-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0049.g30.t2

ATGCCAGCTCCCGGGAAGCTTAGGGACTTGATCCGAACAATCCGAGCGGCGAGGACAGCAGCGGATGAACGATCAGTAATTGCAAAGGAGTGTGCATATATCAGGGATTCATTTAGAGAAGAAGACAATGATTTCAGATGCCGCAACGTTGCCAAGTTGCTTTACATTCACATGTTGGGATATCCAGCACATTTTGGTCAGCTTGAATGTTTAAAATTAATTGCTTCTCCAAAGTTTACGGACAAAAGAATCGGGTACTTAGGAGCTATGCTTCTCCTAGATGAGCGACAAGATGTCCACTTGTTGGTGACAAATTCCCTTAAAAATGACCTGAATCATTCCAACCAGTTTGTCATTGGTCTGGCACTATGTTCTTTAGGAAACATTTGCTCTCAGGAAATGAGTCGAGATTTAGCCGGAGAAGTGGAAAAATTGCTGAAGTCAACTAACTCTTATCTCAGGAAGAAGGCTGCCTTATGTGCTGTTAGAATCGTTCGAAAGGTTCCTGAACTTCTGGAAGTGTTTGTTCCATCGACAAGGTCGCTTCTCAATGAAAGAAATCATGGTGTGTTGGTCTCTGGGGTGTCTTTGGTCACCGAGATGTGCCGTGTTAACCCTGAAACACTATCACATTTTCGAAGGCATGTTCCTATATTAGTGAAGACATTAAAGAATCTGGTAATGTCAGGATACTCTCCAGAGCACGATGTATCAGGAATCAGTGATCCATTtattcagGTTAAAATTCTGCGACTCCTGAGAATGCTTGGCAAAGATGAGGAATCAGTCAGTGATCAGATGAATGATGTTTTGGCTCAGGTTGCCACAAATACAGAAACAAGCAAAAACGTTGGCAATGCCATCCTCTATGAGACAGTTCTCACCATAATGGACACCAAGTCTGAGAGTGGACTTAGGGTTTTAGCGATCAATATTTTAGGACGATTTCTTTTAAACAATGACAAAAATATTAGATATGTGGCTTTAAACACACTTTTAAAGACAGTTCAAGCAGACTACAATGCAGTGCAAAGACATCGGACAACAATCTTGGACTGCCTGAAGGACCCAGACATTTCCATAAGGAGAATGCTTGGCAAAGATGAGGAATCAGTCAGTGATCAGATGAATGATGTTTTGGCTCAGGTTGCGACAAATACAGAAACAAGCAAAAACGTTGGCAATGCCATCCTCTATGAGACAGTTCTCACCATAATGGACACCAAGTCTGAGAGTGGACTTAGGGTTTTAGCGATCAATATTTTAGGACGATTTCTTTTAAACAATGACAAAAATATTAGATATGTGGCTTTAAACACACTTTTAAAGACAGTTCAAGCAGACTACAATGCAGTGCAAAGACATCGGACAACAATCTTGGACTGCCTGAAGGACCCAGACATTTCTATAAGGAGGAGAGCAATGGAGTTATCCTTTGCTCTTGTCAACTCCAGTAACATTCGTGGAATGATGAAGGAGCTGCTGGCATTTCTTGTCAATACTGATGTTGAGTTTAAGTCTTATGTCACTTCAGAGATCTTCCTGGCAGCAGAAAAACATGCACCAAACAAAAGATGGCACATTGACACCATGATGAAGGTTCTAACAACTGCTGGAGGTTATGTCCGTGATGATACAGTCCCCAGTCTCATTCACCTGGTATCTGCGTCAAGTGAACTGCAAGGATATGCTGTCCAGCGTTTGTTCAAAGCCATGTTAAATGACATCAGCCAGCAACCTCTGGTGCAAGTTGGGTCTTGGTGTTGTGGAGAATATGGAGAGCAGCTTTTTGTTGAAATCGAAGAGGACGAGGCCACCCCAGTCACCGAGAATGACGTGCTTGATGTGTTGGAGAGTCTGCTCTACAGTTCCCACTCCACACCGACAACCAAAGACTACGCCTTAACAGCAGTCATGAAACTCAGTACACGATTTTCCTCTTCACTGGAACGAATCAAGACTATTATCAACAAATTTGAAGTGAACATGGATGTGGAATTGCAACAGAGAGGGGTGGAGTTTGGATCACTTTTCGGCAAACACGAGTCTATGAGAACTGCTTTGTTGGAGAGAATGCCTGTATTTGAAACGAAAGCATCCGAGCAAATACCAAATGGAGAAGTTCCAACCCAACAGGAACCTGAGACTGTTACCAAACAAGAAGTTGTCACTGAACAGAAACCAGCAAAACAAGCGTCTGAAACATTGTTGGATCTACTTGGTGGGGGTCCTGTGGCTGAACCAACGCCCGCCCCAGTCCAAACACCTGCTCCCGCGGCCTCACCAGGCGGAGGACTCTTAGATTTACTTGGTGATCTGGATCTGGGCTCAACGAATGGAGGTCCTCCTCCCCAGAACATGATGGCGCCTTCGCCTGCTTTGCCAAACCTGTTGGACGGCGGAGATCTGTTAAATCCAGCACCTGTGGGGCTGCCCCAGTTGCAACAGGCTCCACCTCAGATAAATCACGAGCCATTCGCCTCGATAATTGAAAAACAGGACTTCTCTGCAGGTATCCCATCAATTACGGCATTTCAGAGCAATGGTTTGAAAATCGATTTCGCGTTTGAGAAATCTCCAGGCAACCCGTCGAATGTAGTGTCAATTATGGTAACAGCGACAAACTCGCTCGCCTTTCCAATGACTGACTTTGTATTCCAAGCCGCTGTGCCCAAGACATTTCAGCTACAGCTTCAAAGCCCGTCTGGTAACGTTATACCGCCGAATAACTCTGGAGCTGTCAATCAAGGTATCAAGGTCGCAAATCCTCAGCAGCAACCGTTACGAATGCGACTCAAAGTGACGTACAAGGTAAATGGAGCGCCAGTCAATGAACAAGGCGAGGTGAACAGTTTCCCTCCTGGACTCTGA

Transcript

amic_s0049.g30.t2

CTCAGTACAAGTCCCTCCCTCTGCACTTGCGCATTCGACCTCCTGCTTCGCCGATCGTAAGCCGTGGAACGTGGAGACGTTTCCAAACTAATTTCCTTCTTTTGAGGGCAGAATTTCATCGGAGTTCTTTTCTCAGGAACTCCTGATCTGAGACCTCATCATGCCAGCTCCCGGGAAGCTTAGGGACTTGATCCGAACAATCCGAGCGGCGAGGACAGCAGCGGATGAACGATCAGTAATTGCAAAGGAGTGTGCATATATCAGGGATTCATTTAGAGAAGAAGACAATGATTTCAGATGCCGCAACGTTGCCAAGTTGCTTTACATTCACATGTTGGGATATCCAGCACATTTTGGTCAGCTTGAATGTTTAAAATTAATTGCTTCTCCAAAGTTTACGGACAAAAGAATCGGGTACTTAGGAGCTATGCTTCTCCTAGATGAGCGACAAGATGTCCACTTGTTGGTGACAAATTCCCTTAAAAATGACCTGAATCATTCCAACCAGTTTGTCATTGGTCTGGCACTATGTTCTTTAGGAAACATTTGCTCTCAGGAAATGAGTCGAGATTTAGCCGGAGAAGTGGAAAAATTGCTGAAGTCAACTAACTCTTATCTCAGGAAGAAGGCTGCCTTATGTGCTGTTAGAATCGTTCGAAAGGTTCCTGAACTTCTGGAAGTGTTTGTTCCATCGACAAGGTCGCTTCTCAATGAAAGAAATCATGGTGTGTTGGTCTCTGGGGTGTCTTTGGTCACCGAGATGTGCCGTGTTAACCCTGAAACACTATCACATTTTCGAAGGCATGTTCCTATATTAGTGAAGACATTAAAGAATCTGGTAATGTCAGGATACTCTCCAGAGCACGATGTATCAGGAATCAGTGATCCATTtattcagGTTAAAATTCTGCGACTCCTGAGAATGCTTGGCAAAGATGAGGAATCAGTCAGTGATCAGATGAATGATGTTTTGGCTCAGGTTGCCACAAATACAGAAACAAGCAAAAACGTTGGCAATGCCATCCTCTATGAGACAGTTCTCACCATAATGGACACCAAGTCTGAGAGTGGACTTAGGGTTTTAGCGATCAATATTTTAGGACGATTTCTTTTAAACAATGACAAAAATATTAGATATGTGGCTTTAAACACACTTTTAAAGACAGTTCAAGCAGACTACAATGCAGTGCAAAGACATCGGACAACAATCTTGGACTGCCTGAAGGACCCAGACATTTCCATAAGGAGAATGCTTGGCAAAGATGAGGAATCAGTCAGTGATCAGATGAATGATGTTTTGGCTCAGGTTGCGACAAATACAGAAACAAGCAAAAACGTTGGCAATGCCATCCTCTATGAGACAGTTCTCACCATAATGGACACCAAGTCTGAGAGTGGACTTAGGGTTTTAGCGATCAATATTTTAGGACGATTTCTTTTAAACAATGACAAAAATATTAGATATGTGGCTTTAAACACACTTTTAAAGACAGTTCAAGCAGACTACAATGCAGTGCAAAGACATCGGACAACAATCTTGGACTGCCTGAAGGACCCAGACATTTCTATAAGGAGGAGAGCAATGGAGTTATCCTTTGCTCTTGTCAACTCCAGTAACATTCGTGGAATGATGAAGGAGCTGCTGGCATTTCTTGTCAATACTGATGTTGAGTTTAAGTCTTATGTCACTTCAGAGATCTTCCTGGCAGCAGAAAAACATGCACCAAACAAAAGATGGCACATTGACACCATGATGAAGGTTCTAACAACTGCTGGAGGTTATGTCCGTGATGATACAGTCCCCAGTCTCATTCACCTGGTATCTGCGTCAAGTGAACTGCAAGGATATGCTGTCCAGCGTTTGTTCAAAGCCATGTTAAATGACATCAGCCAGCAACCTCTGGTGCAAGTTGGGTCTTGGTGTTGTGGAGAATATGGAGAGCAGCTTTTTGTTGAAATCGAAGAGGACGAGGCCACCCCAGTCACCGAGAATGACGTGCTTGATGTGTTGGAGAGTCTGCTCTACAGTTCCCACTCCACACCGACAACCAAAGACTACGCCTTAACAGCAGTCATGAAACTCAGTACACGATTTTCCTCTTCACTGGAACGAATCAAGACTATTATCAACAAATTTGAAGTGAACATGGATGTGGAATTGCAACAGAGAGGGGTGGAGTTTGGATCACTTTTCGGCAAACACGAGTCTATGAGAACTGCTTTGTTGGAGAGAATGCCTGTATTTGAAACGAAAGCATCCGAGCAAATACCAAATGGAGAAGTTCCAACCCAACAGGAACCTGAGACTGTTACCAAACAAGAAGTTGTCACTGAACAGAAACCAGCAAAACAAGCGTCTGAAACATTGTTGGATCTACTTGGTGGGGGTCCTGTGGCTGAACCAACGCCCGCCCCAGTCCAAACACCTGCTCCCGCGGCCTCACCAGGCGGAGGACTCTTAGATTTACTTGGTGATCTGGATCTGGGCTCAACGAATGGAGGTCCTCCTCCCCAGAACATGATGGCGCCTTCGCCTGCTTTGCCAAACCTGTTGGACGGCGGAGATCTGTTAAATCCAGCACCTGTGGGGCTGCCCCAGTTGCAACAGGCTCCACCTCAGATAAATCACGAGCCATTCGCCTCGATAATTGAAAAACAGGACTTCTCTGCAGGTATCCCATCAATTACGGCATTTCAGAGCAATGGTTTGAAAATCGATTTCGCGTTTGAGAAATCTCCAGGCAACCCGTCGAATGTAGTGTCAATTATGGTAACAGCGACAAACTCGCTCGCCTTTCCAATGACTGACTTTGTATTCCAAGCCGCTGTGCCCAAGACATTTCAGCTACAGCTTCAAAGCCCGTCTGGTAACGTTATACCGCCGAATAACTCTGGAGCTGTCAATCAAGGTATCAAGGTCGCAAATCCTCAGCAGCAACCGTTACGAATGCGACTCAAAGTGACGTACAAGGTAAATGGAGCGCCAGTCAATGAACAAGGCGAGGTGAACAGTTTCCCTCCTGGACTCTGACAACGCTGACAAATCTGTAGAAAAATTATATTTTGTACGGTAGATATGTATTTGACAACCTTGTAGCGTTAGGTGTAGGTTGTACTGAGATTTCGGAATTTGTGGAAAGAGTCAACAGATAGCTTCTTCGTTTTAATGTGGTCGATCACAGGATCTCCGAAACACATGGTGGTATATTTAAGGCTTGTTTTACCGTGCAATCGTAAGAATTAAGAAttaattagcattgacgtcaacggcagcttcatcgtaagacaacaatgatgtgattagttaaatcagggaaaataatcgtgctgcacgcacttcagtgcatttctttgacgttttctgccaaaatacaacgtggaatttccaaatttgggattttaacgacaaagtgaacattcggcaataattccttaattcggtgtacttatatttatgcggcttttaccagtccatttctagcatcaacatagaatgcgagcaagaggcaatggtcagaaagtagtcaccattgtacaaatgtttgtgacgttttcgccgcctttagctgttgtttctgctgaagctcTGTGGTAGCTAAGTATAGTACACTAACCCAGACGTGTTTCTATCATTAACGCCATGATTTAAAGGAAAATAAGAAGCTAAGCTAAGTCGCTTTCGTATGTTGCATGTACTGTTGCCTGCGTCGCAAGCAAAAACAAACCGTGAGTGCCTTGTTCATACTGTGTGGTCGGTAATGACTAACTAACTTTTCCACCAACGCATAGAATGCACCAGACAGGTCGCATGGTGACCTGTCTCGTGCCCCCCACCCCCCACCCTGCATCTTTCCTACAGCGTTAGTTAAAGTTAACGGGGATTTCCAGTGCAAATTCTTCAATTTAATTATCATAGAATTGGCCTTCACAATGGTGGCGGCTAAGTTGTTTGGTGAAATTACTTCAGGAGAAGGCTAATTATTATTCACTAATATGGTCGAAAACTTAATACAAAGAAGGATGCTCTATTCTTGTAGAAGCAGCCATTACTTGAGCCTTCTAGCTGAGAAGATTTGCGGAAATCTTTGCTTTCGCCACCACAATGTTTGCCACCGATATTAACCGGGATGTGGATTATATTTTTCCTGTCATTACTCCGTACTAAACGCTTCATCCGGTGAAACTTCACGTTTGGTTTTGGTCAATTGAATCCTAAGTTGAAAAAAAAAAATGACAGATTACAGTGAACGGCCAAAGGAAGGCTGTTCCTTCTCTTGTGTTATCGCTCCTGAACTTCAGAGAACTTGCTCAGAGGCTTGGAATGACAGACAAGAGAACTGCGTTTCTTGACTTTTGGTGACGTTCGTCATATCTCTTTCATGGGAACGATGTAAAATAGACGTATTAGTTAAACAAATGCCGTAAATTGGCCCATTTCCGATGTCTACACGTCGGTGTGCTTTAATATTCTTCCATCCTCAAAAATGTAGGACCTGTATCCACAAGATATCTTTGTCACATTTCGTGTTTTGCTGTAGACCTTTTCATTTTGGGCGTGGGTTTGCCTGTTTAACTTCACTTTTTTCCAAGCTATCGAATGTCTTCAACCAACCGCTGGCTTTAGCGTTTCTATACTTTCTTTCTTGGTTAGAAAGAATGATATCACGCACTGCGAGAGGGTTGCGGGATATCCAAACGCCACAAATTGCAACTAGGAACTGTAAAATTTCAAATCGCCTCTAGAGGCGTCTTTTTAACGGAACTTGTAAAAGGTTGAAAATTTGATGTCAAAATAAACGTCTAGATTTTCAGGTCAGTTCAGTTCTCTCTTCTTTTTACCATAAAATTACCTTTGCAAGCTTTGTATACGCAATAATGATCTGGTTGAGAGTCATCTACATTGCCCGTGCAAAGCTGAAAAGCCGACTTTTTCAGCTTAAGAGGACTTTCGCTACAAGAAAACGCCTTATTGCGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O43747	AP-1 complex subunit gamma-1 OS=Homo sapiens OX=9606 GN=AP1G1 PE=1 SV=5
Q5R5M2	AP-1 complex subunit gamma-1 OS=Pongo abelii OX=9601 GN=AP1G1 PE=2 SV=1
P22892	AP-1 complex subunit gamma-1 OS=Mus musculus OX=10090 GN=Ap1g1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004508 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02883 all species →	Alpha_adaptinC2	Adaptin C-terminal domain	Domain	Interproscan
PF01602 all species →	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR008152 all species →	Domain	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR002553 all species →	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan
IPR013041 all species →	Homologous_superfamily	Clathrin adaptor, appendage, Ig-like subdomain superfamily	Interproscan
IPR017107 all species →	Family	Adaptor protein complex AP-1, gamma subunit	Interproscan
IPR008153 all species →	Domain	Gamma-adaptin ear (GAE) domain	Interproscan
IPR050840 all species →	Family	Adaptor Complexes Large Subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22780 all species →	ADAPTIN, ALPHA/GAMMA/EPSILON	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030117 all species →	Cellular Component	membrane coat	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0030121 all species →	Cellular Component	AP-1 adaptor complex	Interproscan
GO:0006896 all species →	Biological Process	Golgi to vacuole transport	Interproscan
GO:0035615 all species →	Molecular Function	clathrin adaptor activity	Interproscan
GO:0140312 all species →	Molecular Function	cargo adaptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12391	AP1G1; AP-1 complex subunit gamma-1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.