Gene detail

Detailed information of amic_s0049.g31.t1 in Acropora microphthalma

Genomic Location: sc0000049_pilon:346116...351505
NR annotation: XP_029199103.2, iroquois-class homeodomain protein irx-4-like isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0049.g31.t1

CAAAGCTGACGGAGTTCTTGTGGAAACTACAAGATGAAACGATCGAAGATATTGTTCTGCGCACTGAAGTGAGTGGCGTTCTGTGAGGCTTTCGAGAGTACTGTACAATAACGACAGTTCATCGACCAAGCTACATTTTCGTAGCTCTAACTTTACCCGGCCTCACTCGGGCTAAGAAATAACAGTAGCTATTGTTTCTCTTCTTAATTTATTTAAGTTTCGAGTGGTTCAATTTTGAATCTCCGCTTGTCGATTGACTAAGTAATAATCCCTCGTTTTTGGCGTTGAGAATCGATGGCGAACTCTACAGCCACAAAGACCGCTTTTCCACAATTTGGTTGCACGTATTCCTCGCAGTTGATGGTCCCTGGTTCGCACACGGCTTCTTGCTGTGATTCCGTCCGTTCGCCTTTACATGATAGTCCCGCACCGCGTTCGCTCTGTCCGTGTCAACTCGACCGAGTTCTACAACATCGAGTTGCATCGATGCCTGTGAACGTACTTCCGAGGCCGTCATTCAACGAAGCAGGGTTTGCAATCGGCGCTGCAGACATTTCGGCCTTCTATTCGCCCTTGGCGCGTCCTTGTGATATTAAAGAATGGCGAGATTCGTGGTATTTGCACGCCAGACATCCATTAGACGTACATGGGTTTGATCCACATTCGCATACATCTTGTTCACGGCTCGGTGAAAGATATTCTCCCATCGATTTGGCTGCCGCTGGAGCAAGACGTAAAAACGCAACGCGAGAAACAACAAGTACTCTGAAAGCTTGGCTCTACGAACACCGTAAAAACCCGTATCCTACTAAAGGCGAGAAGATAATGTTAGCCATAATTACAAAGATGACGCTAACACAAGTTTCAACGTGGTTCGCGAACGCAAGACGGCGCCTTAAAAAGGAAAACAAAATGACCTGGTCTCCCAGAAATAGATGTGGAGAGAAAAAGGATGATGCGGATGAAGACGAAGACGGTGTGAGTGATTCAGACTTCGAGGAACATAGCTGTGAAGACGAGAAACTTGGTGTAGGAAAAGAGGAAACAGACAAGGACGAGAGGAAAGAAAACATCCAGTTAAACATGGACGTTCACGAACAATCGAAAAACAACGTAAACAGCGTGGAGGGTTTACCAAGCAAATCATCAAATTCAGTGATTCGATATCAAGACCTGAGAGCTGTGCACTGTGTTACAAGCGCCGCTGAGCCAAGTGTGCAAGATTCTCCGGTCAAAAGTCTTCGGAAATGGGTGGACGGGTGTTTCCACAACACTCCTGCAAATCTTGTGAACACGATGAGCCCAATTCAAGTTGCTAGCGCGGAGACACCGCCTTCAACACCCACAAACAGATCTTCAACGGAAATGTCTGTTATTAGCTCAGTTCGTGCTTCGACGCCTTCTCTCGATATAGCAGGGAAGAAAGAGATAAATAATGCATCGAGGGCATCTTCACCGGCGCCGAGCGAGGATGACCTAACAGAAAAATCGAAGGTGGAAGCAGACAACAGCAGCACCTACAGTCCGATTAAAACGAGAAGTGTGGTCACGACAGATTACAGGGAAATCGATGCGGCTTTAGCTTTAACGACACTATCAGCTCGATAGAAGATATCTCTGATAGTAGAAGTAGTTGTACATAATGTGGAAAGATTCTACGACGTTTTTCTAACCGAAAGGACGAAATCTTGCAAGTAGCATTTCCAAACAAAAAAGAAAAAGAAAAAGAATACAATAATAACCGAGTGTCACAACACGAGGTCTTCATTTCGTGGTTCCATTTTGAAGTGTGTCGTGTGGGTATGAAATACCATTCTTTCAATCTTTTTCAAGGCGTTTATTTTATACCTCTTAGTCTCCGAATTTCTACGCGACGACCTAGAGGTGCTCAAAGCACGGACTGTGTGAATTTGAATTCTTTGACTTGAAGATTAACACGAAGTGTTATAAAGAAAGGCTTGCTCTACTTGTGAGGGATTGTCAGGCTTTTTAAACAAACGGGTTGTAATTTAATTGTTTACCGAGAGAGAAAGATATGTTGCCAAAAAAAAAGGCTAAAAGAAAAACTGCATGGGTTTACAGTGTGTTCAATAGATGTTTTAATCTCCATCGGTGAAGATACCAGAATATTTGTAGCTGAATTCAAAGGAAATGGTAATTTTGAAATAAAACCCGCTCTCACGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q90XW6	Iroquois-class homeodomain protein irx-4-A OS=Xenopus laevis OX=8355 GN=irx4-a PE=2 SV=1
Q688D0	Iroquois-class homeodomain protein irx-4 OS=Xenopus tropicalis OX=8364 GN=irx4 PE=2 SV=1
Q503Z8	Iroquois homeobox protein 6a OS=Danio rerio OX=7955 GN=irx6a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006171 (this species only)
Transcription factor family	Homeobox · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05920 all species →	Homeobox_KN	Homeobox KN domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR008422 all species →	Domain	Homeobox KN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11211 all species →	IROQUOIS-CLASS HOMEODOMAIN PROTEIN IRX	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030182 all species →	Biological Process	neuron differentiation	Interproscan
GO:0048468 all species →	Biological Process	cell development	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24889	IRX; iroquois-class homeodomain protein IRX	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.