Gene detail

Detailed information of amic_s0049.g35.t1 in Acropora microphthalma

Genomic Location: sc0000049_pilon:395036...408534
NR annotation: XP_044175159.1, pachytene checkpoint protein 2 homolog [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0049.g35.t1

CGGGAGGGGCTGAGGGAGATGCGGGATGGGTGGAGATGTTTTACCAATTCGATAGATAACATTATACGACAAAGGTGAACTCATTGCCGAAATGGAACAAGTTCATGATCTTTCCGAAGCCCTCCCTTCACAGGCTTCGCAGACTTATCACATCGAAGTTCTTCAAGATCCTTACAGCACCGCTACGTCTGGCACAATTAAAGAGCACGTGAGAAAGTTCCTATTGCACGAGGCCACTGTGTTTGGTGATACAACCTTTTCGGAATTTAGTGACATATTTTTGACGCAGCATGTGAAATCAGTGTCAGTCTGTGACACAGAGATGGTGACTAATGACAGACAGGGTAGCCTAAAGAACTGCAAGTTGGCAATCCATGTTTTCCAGCTTCATGATGATGGTCCGGCAACTGAAGAGCTTGAAGAGGACATTGCAGCTGCTAATCACTGGCTTTTACCATCTGAGGATTTTCATGGAGTTTGGGACAGTTTAATATTTGATTCAGATGTCAAAGCCCAGCTTGTTAACTATGCCACCACCACTCTGCTGTTCTCAGACAGGGGTGTCAACAGTAATGTTATATCATGGAACAGAGTTGTATTACTTCATGGTCCACCTGGAACTGGAAAAACATCACTTTGCAAAGCCCTCGCTCAGAAGTTGAGCATCAGGTTATCAGATCGATATTCTTATGGTCAGCTCATTGAAATAAACAGCCACAGCTTATTCTCCAAATGGTTCTCTGAGAGCGGAAAGTTGGTGATGAAGATGTTTCAGAAGATTCAAGAGCTGATTGACGACAAAGATGCCCTGGTGTGTGTTTTGATTGATGAGGTTGAGAGTTTGACGGCAGCTCGCAAGTCAGCAATGCAAGGCCAGGAGCCCTCAGATGCAATAAGAGTAGTTAATGCTCTTCTAACTCAAATTGATCACATCAAAAGGTTTCCTAACGTCCTCGTCCTCACGACCTCTAACGTGACAGGTGCTATAGACCTAGCATTTGTTGACAGGGCAGACATCAAACAATACATCGGCCTCCCGTCTGTCAATGCAGTTTTTTCTATTTATCATTCCTGTATAACAGAGCTTATGAGGGTTGGGATTATTTCTCCTGTACAGCAAATTCTTGGTGTGAGGGACTTAGAAGTCTTACGTTTTATCAACAATGACGCTACCAATCTCAGTTTACAGCTTTTAGAGATAGCGAGGAAAAGTCATGGTTTGAGCGGAAGAACGCTCCGGAAGATCCCATTTTTAGCGCATGCGGGGCACATCCAGACACAATCCGTGACATTACCGGTGTTTTTGAGTGCGCTCTCAAGGACGGTTGATAAGCAGTTCGAAGACCGAGAAAACCTCAAGAACGATGACTAAAAAAAGAAGACAGCAAACGATAACTGATCAACCAGGCTTTATTTGTTCGAAGGTTGGACAATGTAATTCACCGGAAAAACCTCTACCAGGCTTGTAGATAGCTGAatagagcggttttcaaatgactgtcgaaagaccaaaagcaaagcaattactacgaacgatcacaacaggagcagacagcgcgatgaaccaatcagaatccatggcaattacctgtaactcgctcgaagcgcgggaaaaatcgcgcgtacatggtgcgattggttttggttttgcttctcattggttgagaaattggcgcgagacttttaagccaatcactaagcgtagcaatcgcaatcacgtaattactttggacagtcattttgaaaactgctctaTAGTTTAggcaatgaaaacgccagaaaacaatgatatgattggttgaatgaggaaaaataatcgtgctgcacgtgcagtatgcacgtaagtatattctttcgtaaaatttataaatttagggttttaacgacaacacacaacaatgaatctttcatttgctctgtttacttcaacggcgttgcaaccagtccatttgtggcattctctgtcactgaacaatatagaacgagatcaagaagcgataatGCATGGTTCAATTGTACCTGTTACCATCTCCCTCAGGCAACCCCCGGGAAACGTCTACACCTTCAGGCCCGGGGTTGGGGAATTACTTCAAACTGTCTTGTCTCCGGGGTCAGGGGGAGGGGCAACTTAAAATCAAAAGTATCTACTCGTCGTTCTTGTGAAGCACGTCACTTCTCGGACCGCGTGGAGAATTACTTCCAGGGAAAATGCCCAGAATTTGTTGCAGACTGGTTAGAATTGAGTAACCTTTCAAGAAAGAAAAAAATGGCGTATCCCCGGGGGTATGCCCGGAGGGGATGATAGCACGGAGCTTGGCGGCGTAGCCGTGATTACTGCTAAAACTCCTTAATTGTTTTAATAGCGTTCATTCGTTGGCTAGATGTTTTATTGCATATTACGTTCCTTCCCTGTCCATTCCCTGGGTCAAATGCCTTTTGGCTAAAAAAAAAAGAAGAAAAGAAAAGCTATTTTTGTCTGTTTTTGTTTTGTTTTTCAAATATCTGCATCGTAGTTTTTGTAGTGTATGTTGACAAAACTAATACCTAAAAATCAACACCCATGGAAATGGCATGCTCGATTTCCAATTACAATCTGAATAACGAATTTCGTGCTAATATCATTCATTAAAAGCAATCTTGGCGTTGCGTTCATTGTACAGAATAGCTCATTGCAATAAATATTGATTTTATTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P4W8	Pachytene checkpoint protein 2 homolog OS=Xenopus tropicalis OX=8364 GN=trip13 PE=2 SV=1
Q15645	Pachytene checkpoint protein 2 homolog OS=Homo sapiens OX=9606 GN=TRIP13 PE=1 SV=2
D3K5L7	Pachytene checkpoint protein 2 homolog OS=Sus scrofa OX=9823 GN=TRIP13 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005062 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044539 all species →	Family	Pachytene checkpoint protein 2-like	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR001270 all species →	Family	ClpA/B family	Interproscan
IPR003960 all species →	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45991 all species →	PACHYTENE CHECKPOINT PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0007131 all species →	Biological Process	reciprocal meiotic recombination	Interproscan
GO:0051598 all species →	Biological Process	meiotic recombination checkpoint signaling	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22399	TRIP13; pachytene checkpoint protein 2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.