Gene detail

Detailed information of amic_s0049.g55.t1 in Acropora microphthalma

Genomic Location: sc0000049_pilon:710631...719763
NR annotation: XP_029196869.1, calretinin-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0049.g55.t1

CGTGATGTACACAATATTAAAAGCGAATTTTGGGCAATGTAAGAGTTATTGCGATCTTGTAGGCAAACAGAATGGAAGGCAAAAAAGCATCCTGTATGTTGCAATTCAAGAGTGACGCCAAGCTTTCATCGGAAGAATTCGTCAAAGTCTTTAAGGAATTCGACAAAGATGGGAATGGCTATATTGAAGCCGATGAACTCACAGATTTTTTAGTTATTCTTCTTCGCGAAACTGGTAACGAGAATCCAAGTGAACAAGAACTGAAGGAATTCAAGCAGTTCATTTTGGAAAAGTGTGATGATAACTTCGATGGTAAAATCAGCATGCCAGAGCTTGAAAACATTCTTCCTACAGAGGAAAACTATTTAGAACAGTTTCGGAAAGAATTTCAAGCGGACAAAATGGACAGTATTCAATTCATTAAGATATGGAATCACTACGACAGCGACATGAGCGGGTATCTGGACGGAGATGAAATCGATGCCTTTCTCAGAGACATGTTACAACAACAGGGCTGCAGTGCGAGCACGCAGCTTATCAAAGACTACAAACAGTTTATTATGGATCGTTATGACGACAACAAGGATGGGAAAATCGGTTTAAAGGAGCTATCAAGTATTCTTCCAAAGGAGGAAAACTTCTTTGCAAAATTTCAGGGGAAGCCAGCACTATCAAGGGAAGATTTTGATGAAGTATTCGACCACTACGACACGGATAGAAGTGGAGAGATCGATTCTTCAGAACTGTTGGTCCTCTTGCGTGATGTAATGAGGAAAATGCAACTGGAGCCAGATAGCGCCCAGGAATTGGAAAAAATGAGAGATGTCGTCCTTGGTGTTTCGGACAGAAATAAAGATGGAAAACTATCTCGAGCCGAGCTGGCACTACTTCTCTCCGATATGGACGAATAATAGCAAGATACACGCACAAGAAAATTTTAAATTCGCTTTATATATGGCTCAACAGATAAGACACAATAGAAAAATGGAATACAGATATTGAATGAATTAGGTTTGACGAGTATTTGTAGGTGAAGACGGTAATTGGATTGTTTTGGAATTATTTCGTAACCCATTTAACACGATAGGAAACTAGTAAGATGAATCTTTCTTTTTTATTTCACTTATTAGTCGAGACATTTGCTAAAACTCTTTAATACAATTTTTGTAGCAGTTTTGAATAACATTGGCAGTTGTTTATATTAATGAATTCAACTTGAAAAAGCAATATTCGTCGGACAGCTTGACCCTGAAGTACTAAACTTTTAGTTTGAAATTTTTTTTGCATTTTGTATGAAGTTGAATGTGTGATCTCAAAATGGAAGCTTTTTTCATTGACTTCATTATTAGAGAAAAACTCTTTAGTTCTGCCACAAGCCTCGTTGCTTGCAATAGACTGATACATAATAACTTGCTTGCATGTTAATCCTTAATAGGTTCCTCTTTACTACATCATCAATAAATAAAAGCAATTGTACCCAATCTTTGAGTTCCCTGAGTCAGTCGTCAGTCCTTGGAGATAAACTGGACATTTTTCCTTTTCAATACAGATCTTTCTCAGATATTTTTATGGATTTTCTCTTGTCTCTTCGCATTATGGTTATACACTTCGAAGTGCATATTTCAAATAAACTACTCACAGTATAATTAAACCGGCAAAACTCACCTGTTAGCAATTTTTCTGGCTGGATTCCCATCCGAGTTAGAGTCAATTGCAATTGTAAATGGACTCGAAATAGAGGCCTTGAATTGGAATATCATAGGAGATGTGTAAGGCTTAAAAATTACGACGACGTAAAAACAATTAAAAACAACTAGCGCCGTGAGAGAAACGATTGATTTATTCCCGTGAGAAGACTAATTTACAATGAAATTGCAATTCGCGCAATAACAAGGGATGACAAATTAACTTAGTAAATACAAAATGGCGTACATTATCTTGGGGTTCAAATTTTCTTCGGCTTGAACCTTTTTCAAACCTGTTATGATTTTCTTTTATTTCAGATTGTTATAACTGGCTTGAGTTTTTTTTTTAACCAAGCAGAAATTGAACAACATAATTAAACACCCTTTTAcagt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P07090	Calretinin OS=Gallus gallus OX=9031 GN=CALB2 PE=2 SV=3
P22676	Calretinin OS=Homo sapiens OX=9606 GN=CALB2 PE=1 SV=2
Q08331	Calretinin OS=Mus musculus OX=10090 GN=Calb2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001318 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF13202 all species →	EF-hand_5	EF hand	Domain	Interproscan
PF00036 all species →	EF-hand_1	EF hand	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR051001 all species →	Family	Calbindin Calcium-Binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19972 all species →	CALBINDIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan
GO:0045202 all species →	Cellular Component	synapse	Interproscan
GO:0051480 all species →	Biological Process	regulation of cytosolic calcium ion concentration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23908	CALB2; calretinin	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.