Gene detail

Detailed information of amic_s0049.g80.t1 in Acropora microphthalma

Genomic Location: sc0000049_pilon:1021222...1037127
NR annotation: XP_044175184.1, LOW QUALITY PROTEIN: uncharacterized protein LOC114962101 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0049.g80.t1

TGAATTGAGTGAAGTGATCCTTCCACTGAGACAAGCAGGTGGTCCATACTTACCTTGTGCTGAAATCTTGGAGTATCTTATTCACAGTGTTTTGGAACGTGCTTCGAAAAAAGGTCATTTGGACCGATTCCAAGCAAATCACTGTCACCATGCAATCCTGTACGAACAATGCCAAAAAGCAATTGTCAAGGGGAACTTGCCGTGTTCAGTCGAGGATAGTATTTATCTCAGTGCACTTCAGCTCTATATTGAGGATCTTTCACCTGCCGAAGCACGAGGAAAACCGTCGTGGTCCTTCTTGTCTTCCAGCAAAGAGAAACTCTCAGTATCTCGTATTAAACCAAGCTTACACCAGTCGATGTACAAAGTGAAAAACGTCGGGAAGAGAATAAAAGCGCAGTATGAGCAGTTCGTAACTAATGGAATGACGGAGCGAAATGCTAAGCACAATTTTATCGATTATTGTCAAACGCTGCCGGGATATGGTTGCCACTTTTACAAGCTCAAGGAGTGCATGGGTGCGATCAGTCCTAAGGGGGGTACAGTCAAGTGTTATTTTGGAGTCAGCCCAAAGAAGATCACAGTGATGGACGAGAAAACCAAGGCTGTCATCGGCACGTGGCAGTTAAAAGAGTTGAAGCGATGGAGAGCACTAGCAGATGATACGAGACTCCGTGTAGAATTTATAAACAATACGTTTGAGTTTATCCTCGATAACAAAGGTATTTTCAAAGAGATCAATGATGTCCTTTTGACTTGCGCCAAAATTGAGCTGCAGATACTGGCAGGCGAGGATTTCTCTCCCTGGAGCAAATACGCCGAAGAAACCGAGACCTGGGGTGAGCTGGCACTAGCAGCAGTAGCGCCCAAGCCTGTGTTGTACTCGGACAAATATGACAGTGACTCAGGTATGGTGTCCAGACTCCGAGCTCTCTCCTTGGCTTCCTCTATGCCCGATCGGTATGCTAGGAAGGTTGGGAGGAGGCTTACTAAGACAACGAAACTCTCAACATCAGCGCCCCATAAACATGGCGGTCTGCAGCAGAAAGATGAACCAGGCAGCAGCATATCAAAAGGGCAAAGTGCAGACGAAACAGTCTCTGGAAGTCCAGGTGACTTATCCGTGGCTTCGCAAACGTCAGCTGATGTGCTGCTTGGTTCGTTACAAAGTACGCTGCAATCTTTAAAATGCTCGTGGGAAGGAGGCTCGCTTTCTGCAAGCGAACAAAGACGAACTTCAAGAGGGAGTGGAATGACAAATGATGACGAATCTGGTTCACCCAGTGAACGCGCTCCACTTGATCCTTCCGGTTCGTATCCAGTTGGACAAGAAATCAAACGCAGCGTGTCGTCATCCAGTCATCGTCGCAAGTTCACAACCGAGAGTAACCCGTCATCCCAAGGCAGTGATTCACCCAGCAGTTCGGGACAGCTAACGCCCACGCGCTCCTTCAAAGGCCCGTTCAACTCCACGCTTCGCGAGGATGACGATTTGGAAAGCCTAAGCCGATCTTTTGGCCAGAGTACCAACGGCCAGCTTCTGATCTGCCAGTGTCCTCCGGATGCCGAACTTCCTGGCTTTAATCGTCGAGATTTTACGCCATTTGACTTGTTACAGTATCCCAAGGAATTAGCCAGACAGATAACACTAATTGACCATGAATGCTTCTGCGCGGTAACTGCCACTGATATTCAAAAGAAAATTGCCATGGGAACTGGGAAGAAGAGAAAAGTTCCTCCTGAAGAAAGACTCTCTGTGGAAAAAGTAGCTGACAGATTTAACCAGTTAAGTACGTGGGTTGCAGCCACTATCGTCACGGAAAAATCAGTGGAAAAAAGAGCTAATATGTTTATTAACTTCATCGAAACCGCCAAGCTGTGCTTGGAGCTGCGGAATTTCAATGCTGTGATGGCTATTGTTGTAGCAGCTTTGGGTTGCGCTCCTGTCAGACGTCTGCACAAAACAAAAGAGCTTGTTCCTAAGGAATACCTCGAACAATACGCTAAAATGGAAATCCTCATGGATACAAAGGATAACTATAAGAGATATCGACAAGCTCTTGCAACCTCTCCGACACCTTCTGTTCCTTATTTCGGTATATACATGAAGGATCTCACGTTCATCGCCGAAGGAAACCCAGATTTCTTCAAAGGAGGGTTGATCAACTTGACGAAACGCAGACAGATCTATCTTGTAATTGACGAAATTCGACGTTTTCAAAAGGACGTTTATAACTTCCAAGAGGTATCTGAGATCCGTGATTACCTCGCAAACGAAAAAATTCACACAGAAAAAGAGCTGTATGACATTTCGTGTCAGTTCGAACCAGGCCTTCCGCGGCGACACTCAGAAGCTGGCAAGATGATGACGTCACGTCCAGTCCCGAAATCGAGCGCCGTCAGTGGGCGAATGGCGGGAAAACGATCATTGAGTTTGTCAAGAAGCTCGACAACCTTTGAAGCCGCTGCCACTGGCGCGGAGTCTACAAGTTGACGTCATCGGAACGTCAATCAAACTCTCCCCGAGTCATTGAAATTTCAAGAATGAATGCTAAGTGATAATTTATTGACGAGAATCTGCCTTCTGTAGGCGAATACTGTAAAAATGTAATTTTTATTTTATAGTGAACTTGGTGTCATATACTTATCAAAATTCAAGAACATTTGATACAGCATGAATGTATTATTCATGATAGAGAAATTAGCACATTGTAAATATTTTTACCTGGCTGTACAGGTTGTTCAACTTATTTTATAGACCCTGCAAGCATTATTCCGTTGCAAAATTGAAAACCTTCATTGTTGGGGCGCATGGTGTCATAGGTCCTACTCATGTTTAGTCTCCTTCTTTGATACATAGACCAAAGTCACGCAACACCTCTCATTCCTACGCGTTACCCTGAACGATGAGCGTTGCGTTACTTTGTTCAGAGCGTTAGGATATTTTCCGTGTAGGCCCATACTCATTGCGTAATTACTCCACGATTCGTCTCAAACAAGCCATGTCATCACATTGTAATGTTGGGAAAACAGACCCTAATAATAACCTTCGGCATTTCTCGAAATGAATCGAATTTGTTTTAAAAGTTTTTTCTGAAATAATTAGTCATTTAACTAGTGGGTCAAAAAGAGCGGGAAAACTATATCAAGAACGGGATCTGCGGGAACCGTCATATGCGCGAGGAAACTGGTGCCAGGAACGTTTGTTCTGCCTAAAACAACATGTATTTAAGTTTATTTTATGATTAGTTTTTTTTTTATCATAATTACTTCATACAATTCAATCCCTCGCATGCTTGTTATCAACTCAATAAATATTTCAAATTTAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q552M5	Ras guanine nucleotide exchange factor Y OS=Dictyostelium discoideum OX=44689 GN=gefY PE=1 SV=2
Q8IS14	Ras guanine nucleotide exchange factor J OS=Dictyostelium discoideum OX=44689 GN=gefJ PE=2 SV=1
Q8IS15	Ras guanine nucleotide exchange factor I OS=Dictyostelium discoideum OX=44689 GN=gefI PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003381 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00617 all species →	RasGEF	RasGEF domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001895 all species →	Domain	Ras guanine-nucleotide exchange factors catalytic domain	Interproscan
IPR023578 all species →	Homologous_superfamily	Ras guanine nucleotide exchange factor domain superfamily	Interproscan
IPR036964 all species →	Homologous_superfamily	Ras guanine-nucleotide exchange factor, catalytic domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR008937 all species →	Family	Ras-like guanine nucleotide exchange factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23113 all species →	GUANINE NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0007264 all species →	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007265 all species →	Biological Process	Ras protein signal transduction	Interproscan
GO:0043547 all species →	Biological Process	positive regulation of GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0049.g80.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.